Problems so far. Updated to the most recent version of Freesurfer and now I don't have access to the subject r79. When I try to open it by going to File: Open Subject: r79 I get a dialog box that says
Alert Subjects dir: /usr/local/freesurfer/FS_DIST.Linux/Subjects not writable ...configs won't be saved although with the current computer settings I should have access. Another problem that I seem to be having before I lost access is in the Manual Editing. Going to SubjectTools: Edit Segmentation I don't get the Tkmedit Tool interface that the Tutorial says I should. Instead of an interface with menus for File, Edit, Display, and Tools, I get one with out any menus. The one in the tutorial displays: Cursor with a linked cursor and wrn value Display for Sagittal, Horizontal and Coronal as well as a zoom. It also has two buttons the 'save point' and 'goto point' buttons The one I get again, has no menus but it has more features that I can not manage to get to do anything. Like the tutorial's image I get coronal, sagittal and horizontal display changers as well as an overlay button a surface button and aditional contrast and midpoint numbers. I've got buttons to save imgs, send pnt, goto pnt, read surf, write outim or rgb, wmtrunc, planefilter. I have a second image that I'm supposed to be able to read and compare and a few more things. Is this the same set of tools with a different interface and if it is how do I use this new interface? Can I change it some how to get the old one so I could continue to just use the tutorial to walk through the process or am I stuck?
