Hi, I got the following problems when using the latest version of freesurfer (fsa-20020521) downloaded from the surfer site:
1) Segmentation fault when trying to check the registration using tkregister: [phoebe@taz rnnmean]$ tkregister local tkregister: starting register register: cwd scan => subject's T1/COR's register: reg image transform matrix: 1.171900 0.000000 0.000000 0.000000 0.000000 1.500000 0.000000 99.000000 0.000000 0.000000 1.171900 0.000000 0.000000 0.000000 0.000000 1.000000 register: done reading target COR images register: input file type: bshort (x,y,t: <prefix><z>.bshort) First slice read: s_000.bshort Last slice read: s_123.bshort register: done reading to-be-registered images register: no slice offset (default centered z bounding box) Segmentation fault (core dumped) 2)The settings of the directory for minc tools are weird. I got the bin and lib directory directly under mni_tools. In the previous versions, there is no problem in this setting. However, in the current version, a subdirectory Linux is defined in the middle. Do you know where can I change this? Setting up enviroment for FreeSurfer/FS-FAST $Id: FreeSurferEnv.csh,v 1.2 2002/05/17 21:40:03 greve Exp $ FREESURFER_HOME /home/phoebe/bin/freesurfer_alpha FSFAST_HOME /home/phoebe/bin/freesurfer_alpha/fsfast AFNI_DIR /home/phoebe/bin/freesurfer_alpha/afni FSL_DIR /home/phoebe/bin/freesurfer_alpha/fsl SUBJECTS_DIR /home/phoebe/bin/freesurfer_alpha/subjects WARNING: /home/phoebe/bin/freesurfer_alpha/mni_tools/Linux/bin does not exist. WARNING: /home/phoebe/bin/freesurfer_alpha/mni_tools/Linux/lib does not exist. Any helps will be much appreciated. Phoebe.
