Hi, I am trying to run register.csh (as per the FreeSurfer manual) to motion correct my anatomical scans before averaging them together. However, I get an error saying 'mri_convert: unknown flag "-raw"' (actual output below). Unfortunately, I can't make out from the information what options to mri_convert should actually be used.
Thanks, Nick Knouf Lab Manager, Kanwisher Lab ------------------- uninteresting data snipped ---------------------- ++ CPU time for realignment=279 s ++ Min : roll=-0.285 pitch=-0.072 yaw=-0.997 dS=+6.359 dL=+2.301 dP=+9.563 ++ Mean: roll=-0.285 pitch=-0.072 yaw=-0.997 dS=+6.359 dL=+2.301 dP=+9.563 ++ Max : roll=-0.285 pitch=-0.072 yaw=-0.997 dS=+6.359 dL=+2.301 dP=+9.563 ++ Writing dataset to disk in ./dset+orig.HEAD. ** Warning: will overwrite file regist.afni done registering rotating -0.285 -0.072 -0.997 6.359 2.301 9.563 atr_int == NULL atr_flo == NULL /pasque/nfs_data2/data/subjects/021015nk/mri/orig mri_convert -raw 256 256 256 uchar /tmp/reg.res+orig.BRIK motion_corrected_cor mri_convert: unknown flag "-raw" type mri_convert -u for usage pasque%
