Hi, L-A Thanks for reporting this - I just pushed a fix in galaxy-central 6556:ab1a5ab063ce Please let us know if that resolves the problem?
2012/1/19 Louise-Amélie Schmitt <louise-amelie.schm...@embl.de>: > Hello! > > I'm running into an error when trying to download a composite dataset from > the history with the floppy disk icon. Here is the error message in the > logs: > > > galaxy.web.controllers.dataset ERROR 2012-01-18 16:32:10,324 Unable to > remove temporary library download archive and directory > Traceback (most recent call last): > File "/g/funcgen/galaxy-dev/lib/galaxy/web/controllers/dataset.py", line > 285, in archive_composite_dataset > os.rmdir( tmpd ) > OSError: [Errno 39] Directory not empty: './database/tmp/tmpkRv28I' > > > Then I tried replacing the os.rmdir by a shutil.rmtree to see if it would > solve the issue, and here is what I got: > > > galaxy.web.controllers.dataset ERROR 2012-01-18 16:34:30,239 Unable to > remove temporary library download archive and directory > Traceback (most recent call last): > File "/g/funcgen/galaxy-dev/lib/galaxy/web/controllers/dataset.py", line > 286, in archive_composite_dataset > shutil.rmtree( tmpd ) > File > "/g/steinmetz/collaboration/software/CentOS5/opt/Python-2.6.5/lib/python2.6/shutil.py", > line 221, in rmtree > onerror(os.remove, fullname, sys.exc_info()) > File > "/g/steinmetz/collaboration/software/CentOS5/opt/Python-2.6.5/lib/python2.6/shutil.py", > line 219, in rmtree > os.remove(fullname) > OSError: [Errno 16] Device or resource busy: > './database/tmp/tmpwpsShD/.nfs000000000289ccea00000138' > > > But when I check the contents of the direcory, there is no hidden > .nfs-something file. > > Does anyone have an idea why this could occur? Both our testing instance and > our production instance have the same issue, the first being on > galaxy-central and the second on galaxy-dist. > > Thanks, > L-A > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ -- Ross Lazarus MBBS MPH; Associate Professor, Harvard Medical School; Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444; ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
