Hello, We don't use the nginx module
kind regards, Leandro On Wed, Mar 7, 2012 at 4:42 PM, Jorrit Boekel <jorrit.boe...@scilifelab.se> wrote: > Hi Nate, > > I wasn't before, but I switched to nginx now. Non-uploading is still > happening in firefox (10.0.2 on ubuntu 11.10). > > I can't be 100% sure that my nginx install was correct, but it's definitely > serving galaxy and not complaining. Is there any way to verify uploads are > processed through nginx? > > jorrit > > > > On 03/05/2012 08:37 PM, Nate Coraor wrote: >> >> By any chance, do you all happen to be using the nginx upload module? I >> am guessing not. >> >> --nate >> >> On Feb 23, 2012, at 3:16 AM, Bossers, Alex wrote: >> >>> I confirm the same strange behaviour since some of the last updates on >>> the central version. We are at the latest now. >>> It is also with medium (10Mb+ tarballs) AND large files! Furthermore its >>> seems to be in FireFox only.... They upload fine using IE8 or 9. Didn't test >>> other browsers though. >>> >>> Annoying it is indeed. >>> >>> Alex >>> >>> >>> -----Oorspronkelijk bericht----- >>> Van: galaxy-dev-boun...@lists.bx.psu.edu >>> [mailto:galaxy-dev-boun...@lists.bx.psu.edu] Namens Jorrit Boekel >>> Verzonden: woensdag 22 februari 2012 10:15 >>> Aan: galaxy-dev@lists.bx.psu.edu >>> Onderwerp: [galaxy-dev] uploads stuck in history >>> >>> Dear list, >>> >>> I have stumbled on some strange behaviour when uploading files to galaxy >>> via the upload.py tool. At times, the upload seems to be stalled in history >>> and is never actually performed, followed by a seemingly infinite history >>> update (see log below). My system is Ubuntu 11.10 and runs Python 2.7.2. I >>> find the behaviour in both my own modified galaxy install (based on >>> galaxy-dist), and in a fresh clone from galaxy-central. >>> >>> I have tried to upload different files, and all seem to sometimes trigger >>> the behaviour, but not all the time. A restart of galaxy sometimes sorts >>> things out. Common for the debug messages is that it seems there is never a >>> job id generated as in "galaxy.tools.actions.upload_common INFO 2012-02-22 >>> 10:06:36,186 tool >>> upload1 created job id 2". >>> >>> Has anyone seen similar things or can it be a problem with my system? >>> >>> cheers, >>> jorrit >>> >>> >>> >>> >>> >>> >>> --------------Debug messa: >>> >>> galaxy.web.framework DEBUG 2012-02-22 09:47:43,730 Error: this request >>> returned None from get_history(): http://localhost:8080/ >>> 127.0.0.1 - - [22/Feb/2012:09:47:43 +0200] "GET / HTTP/1.1" 200 - "-" >>> "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 >>> Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /root/tool_menu HTTP/1.1" >>> 200 - "http://localhost:8080/"; "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; >>> rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "GET /history HTTP/1.1" 200 - >>> "http://localhost:8080/"; "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; >>> rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:47:44 +0200] "POST /root/user_get_usage >>> HTTP/1.1" 200 - "http://localhost:8080/history"; "Mozilla/5.0 (X11; Ubuntu; >>> Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:47:50 +0200] "GET >>> /tool_runner?tool_id=upload1 HTTP/1.1" 200 - >>> "http://localhost:8080/root/tool_menu"; "Mozilla/5.0 (X11; Ubuntu; Linux >>> x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST >>> /tool_runner/upload_async_create HTTP/1.1" 200 - "http://localhost:8080/"; >>> "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; >>> rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET >>> /tool_runner/upload_async_message HTTP/1.1" 200 - "http://localhost:8080/"; >>> "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; >>> rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "GET /history HTTP/1.1" 200 - >>> "http://localhost:8080/tool_runner/upload_async_message"; "Mozilla/5.0 (X11; >>> Ubuntu; Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:48:11 +0200] "POST /root/user_get_usage >>> HTTP/1.1" 200 - "http://localhost:8080/history"; "Mozilla/5.0 (X11; Ubuntu; >>> Linux x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:48:13 +0200] "GET >>> /tool_runner?tool_id=upload1 HTTP/1.1" 200 - >>> "http://localhost:8080/root/tool_menu"; "Mozilla/5.0 (X11; Ubuntu; Linux >>> x86_64; rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:48:15 +0200] "POST >>> /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history"; >>> "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; >>> rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:48:19 +0200] "POST >>> /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history"; >>> "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; >>> rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:48:23 +0200] "POST >>> /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history"; >>> "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; >>> rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:48:27 +0200] "POST >>> /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history"; >>> "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; >>> rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:48:31 +0200] "POST >>> /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history"; >>> "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; >>> rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:48:35 +0200] "POST >>> /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history"; >>> "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; >>> rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:48:39 +0200] "POST >>> /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history"; >>> "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; >>> rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:48:43 +0200] "POST >>> /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history"; >>> "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; >>> rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> 127.0.0.1 - - [22/Feb/2012:09:48:47 +0200] "POST >>> /root/history_item_updates HTTP/1.1" 200 - "http://localhost:8080/history"; >>> "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; >>> rv:10.0.2) Gecko/20100101 Firefox/10.0.2" >>> >>> ___________________________________________________________ >>> Please keep all replies on the list by using "reply all" >>> in your mail client. To manage your subscriptions to this and other >>> Galaxy lists, please use the interface at: >>> >>> http://lists.bx.psu.edu/ >>> >>> >>> >>> ___________________________________________________________ >>> Please keep all replies on the list by using "reply all" >>> in your mail client. To manage your subscriptions to this >>> and other Galaxy lists, please use the interface at: >>> >>> http://lists.bx.psu.edu/ > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
