Which me thinks is weird, because my code, when given the -v flag will at
least put out some info to stdout, or worse case, some errors to stderr,
but those are empty too!
On 12 September 2014 10:31, Björn Grüning <bjoern.gruen...@gmail.com> wrote:
> Hi,
>
> as far as I know, it just means your tool did not produced any output, so
> your results is empty. Nothing more. This is no error, or? The box is not
> red?
>
> Cheers,
> Bjoern
>
> Am 12.09.2014 um 16:28 schrieb Calvin Morrison:
>
>> Hi guys,
>>
>> I am trying to write a tool with a conditional and for whatever reason the
>> results, well aren't any results. It just says 'no seek', which totally
>> bewildering. Does anyone know what this means?
>>
>> Thank you,
>> Calvin
>>
>> my xml file:
>>
>> <tool id="quikr" name="Quikr">
>> <description>Classify with Quikr</description>
>> <command>
>>
>> # if $qdb.dbtype == "user"
>> quikr -v -k 0 -s ${qdb.dbname} -i ${input} -o ${output}
>> # else
>> quikr -v -k 0 -s "${qdb.dbname}${qdb.dbsize}".mat.gz -i ${input} -o
>> ${output}
>> # end if
>>
>> </command>
>> <inputs>
>> <param name="input" type="data" format="fasta" label="input fasta
>> file"/>
>> <conditional name="qdb">
>> <param name="dbtype" type="select" label="Genomes to score
>> against">
>> <option value="default" selected="true">Pretrained
>> databases</option>
>> <option value="user">Custom trained quikr database</option>
>> </param>
>> <when value="user">
>> <param name="dbname" type="data" format="quikrdb" label="custom
>> trained database"/>
>> <param name="dbsize" type="hidden" label="mer size">
>> <option value="5">5</option>
>> </param>
>> </when>
>> <when value="default">
>> <param name="dbname" type="select" label="Choose database">
>> <option value="/data/galaxy/data/gg91">Green Genes
>> 91%</option>
>> <option value="/data/galaxy/data/gg94">Green Genes
>> 94%</option>
>> <option value="/data/galaxy/data/rdp">RDP Trained
>> Set</option>
>> </param>
>> <param name="dbsize" type="select" label="mer size">
>> <option value="5">5</option>
>> <option value="6">6</option>
>> <option value="7">7</option>
>> <option value="8">8</option>
>> </param>
>> </when>
>> </conditional>
>> <param name="lambda" type="integer" size="6" value="10000"
>> label="lambda" help="default 10000"/>
>> </inputs>
>> <outputs>
>> <data name="output" format="tabular" />
>> </outputs>
>> <help>
>> </help>
>> </tool>
>>
>>
>>
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