On Fri, Sep 26, 2014 at 3:01 PM, Nikos Sidiropoulos <nikos.sid...@gmail.com> wrote: > Hi all, > > In a tool that I am writting I want to pass an input parameter value > (string) into the output file's metadata. Meaning that one of the tool > parameters is a barcode signature, 'NNWTGXN' for example. I want that > attribute to be stored somehow in the output file in order to be read by a > subsequent tool without the user having to set that parameter again. > > The files I'll be working with are in FASTQ, BAM and tabular format. > > Is it possible? > > Bests, > Nikos
Your code can write the value directly into an output file (e.g. one of the SAM/BAM headers might work), but I don't think there is anything suitable within Galaxy for re-exporting the parameter value as an input parameter for a future tool. However, at the workflow level you can set variables - might that be a way forward? https://wiki.galaxyproject.org/Learn/AdvancedWorkflow/VariablesEdit Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
