The hdparm optimizations, the CFQ scheduler and maybe low latency
desktop in the kernel are the best way to make your desktop useable
under heavy disk usage.These are my hdparm settings:

[snip]

Thanks for your suggestions. As i have an SATA harddisk, can i use
hdparm with it , i thought it could only be used with PATA devices and
for SATA there is sdparm.
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