[EMAIL PROTECTED] wrote:

> Okay - unfortunately i am now totally confused. I have tried to read up on 
> binary data (to little or no avail!!!). My understanding is the MODIS 
> suf_refl_qc data that i have import is a unsigned 16 bit integer number. I 
> would like to select out pixels using this raster  to create a cloud mask 
> based on some of the bit codes.
> 
> for example identify " band 1 quality = missing input" would have the 
> following 
> 
>  * * * * 1 0 1 1 * * * * * * * * * - where * represents placeholder
> 
> If i try and follow Glynn's logic he is saying divide the number by 16 and 
> then take the modulus 16 and then equate it to "11" to get the subset. 
> 
> I am unsure how I choose the "11" and how do i change the syntax to pull 
> out the different masks i may be interested in.
> 
> 0 0 * * * * * * * * * * * * * *   ideal quality all bands
> 0 1 * * * * * * * * * * * * * * less than ideal quality
> * * 0 0 * * * * * * * * * * * * clear
> * * 0 1 * * * * * * * * * * * * cloudy
> * * 1 0 * * * * * * * * * * * * mixed
> * * * * 0 0 0 0* * * * * * * * highest quality band 1
> * * * * * * * * * 0 0 0 0* * * highest quality band 2
> etc...
> 
> Any help would be greatly appreciated. At this stage im plugging in the 
> decimal numbers into binary calculator and using r.reclass to create a 
> MASK.

First, binary numbers are normally written with the bit 0 (the "units"
digit) on the right, so "band 1 quality = missing input" would be:

        1 1 1 1 1 1
        5 4 3 2 1 0 9 8 7 6 5 4 3 2 1 0

        * * * * * * * * 1 0 1 1 * * * *

To shift everything right by N bits, divide by 2^N, so dividing by 16
(2^4) shifts everything right by 4 places, moving bits 4-7 to bits
0-3:

        * * * * * * * * * * * * 1 0 1 1

[Similarly, dividing a decimal number by 10^4 = 10,000 shifts it right
by 4 digits: 12345678 / 10000 = 1234]

To keep the bottom N bits and discard the rest, take the remainder
(modulus) after division by 2^N, so modulus 16 (2^4) keeps the bottom
4 bits:

        0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1

[Similarly dividing a decimal number by 10^4 = 10,000 and taking the
remainder takes the bottom 4 digits: 12345678/10000 = 1234 remainder
5678, so 12345678 % 10000 = 5678]

The binary number "1011"
        = 1*2^3 + 0*2"2 + 1*2^1 + 1*2^0
        = 1*8 + 0*4 + 1*2 + 1*1
        = 8 + 2 + 1
        = 11

So, given your original bit definitions

        bits    description             divide  modulus result range
        0-1     MODLAND QA              1       4       0-3
        2-3     cloud state             4       4       0-3
        4-7     band 1 data quality     16      16      0-15
        8-11    band 2 data quality     256     16      0-15
        12      atmospheric correction  4096    2       0-1
        13      adjacency correction    8192    2       0-1
        14      different orbit         16384   2       0-1
        15      unused                  32768   2       0-1

For the right-hand side:

MODLAND QA (2 bits):

        binary  decimal description
        00       0      corrected product produced at ideal quality -- all bands
        01       1      corrected product produced, less than ideal quality -- 
some or all bands
        10       2      corrected product not produced due to cloud effects -- 
all bands
        11       3      corrected product not produced for other reasons -- 
some or all

Cloud state (2 bits):

        binary  decimal description
        00       0      clear               
        01       1      cloudy              
        10       2      mixed               
        11       3      not set, assumed clear

band quality (4 bits):

        binary  decimal description
        0000     0      highest quality
        0001     1
        0010     2
        0011     3
        0100     4
        0101     5
        0110     6
        0111     7
        1000     8      dead detector; data has been copied from adjacent 
detector
        1001     9      solar zenith >= 86 degrees                              
                                                
        1010    10      solar zenith >= 85 and < 86 degrees                     
                                                
        1011    11      missing input                                           
                                                
        1100    12      internal constant used in place of climatological data 
for at least one atmospheric constant            
        1101    13      correction out of bounds, pixel constrained to extreme 
allowable value                                  
        1110    14      L1B data faulty                                         
                                                
        1111    15      not processed due to deep ocean or clouds               
                                                

A shell script which uses r.mapcalc to split a QC map given as its
first argument into separate maps for each field:

#!/bin/sh
src=$1
r.mapcalc <<EOF
$src.modland    = ($src / 1    ) %  4
$src.cloud      = ($src / 4    ) %  4
$src.band1qual  = ($src / 16   ) % 16
$src.band2qual  = ($src / 256  ) % 16
$src.atmos_corr = ($src / 4096 ) %  2
$src.adj_corr   = ($src / 8192 ) %  2
$src.diff_orbit = ($src / 16384) %  2
$src.unused     = ($src / 32768) %  2
EOF

-- 
Glynn Clements <[EMAIL PROTECTED]>

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