Correct, it still produces a valid label file, even if it does sound rather
annoyed.
Side note, if it would have to go past "_99" to resolve a name collision,
it instead gives up and throws an error. I figured, if your label names
collide that often, you must have done something you didn't mean to do
(like accidentally specify the same string a few hundred times in a
generated text file).
Tim
On Thu, Feb 12, 2015 at 11:29 PM, Glasser, Matthew <glass...@wusm.wustl.edu>
wrote:
> That is just a warning and doesn’t have any practical impact that I am
> aware of.
>
> Peace,
>
> Matt.
>
> From: Alex Cohen <alexco...@gmail.com>
> Reply-To: "alexco...@gmail.com" <alexco...@gmail.com>
> Date: Thursday, February 12, 2015 at 11:27 PM
> To: Matt Glasser <glass...@wusm.wustl.edu>
> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org>
> Subject: Re: [HCP-Users] Duplicate names in
> "${HCPPIPEDIR_Config}/FreeSurferAllLut.txt" ?
>
> Hi Matt,
> I see you still keep similar hours...
>
> Interesting...
>
> wb_command's current behavior is to do the following... I wonder if the
> name really should be changed...
>
> Level: WARNING
> Method: static void
> caret::OperationVolumeLabelImport::useParameters(caret::OperationParameters
> *, caret::ProgressObject *)
> File:
> /Users/caret/caret7_development/mac64/caret7_source/src/Operations/OperationVolumeLabelImport.cxx
> Line: 196
> Text: name collision in input name 'CTX-LH-UNKNOWN', changing one to
> 'CTX-LH-UNKNOWN_1'
>
> -Alex
>
>
>
> ----------------------------------------------------------------
> *Alexander Li Cohen, M.D., Ph.D.*
> Resident Physician
> Child and Adolescent Neurology
> E-mail: cohen.alexan...@mayo.edu (Medical/Science Email)
> E-mail: alexco...@gmail.com (Lifetime Email)
>
> *Mayo Clinic*
> 200 First Street SW
> Rochester, MN 55905
> mayoclinic.org
> ----------------------------------------------------------------
>
> On Thu, Feb 12, 2015 at 11:19 PM, Glasser, Matthew <
> glass...@wusm.wustl.edu> wrote:
>
>> Hi Alex,
>>
>> Those were translated directly from FreeSurfer’s master LUT file, so
>> you’ll have to ask them… :)
>>
>> Peace,
>>
>> Matt.
>>
>> From: Alex Cohen <alexco...@gmail.com>
>> Reply-To: "alexco...@gmail.com" <alexco...@gmail.com>
>> Date: Thursday, February 12, 2015 at 11:17 PM
>> To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org>
>> Subject: [HCP-Users] Duplicate names in
>> "${HCPPIPEDIR_Config}/FreeSurferAllLut.txt" ?
>>
>> Hi all,
>> so why are there multiple entries with the same name in this file? This
>> adds a bunch of "errors" of name collision when running wb_command
>> -volume-label-import, but are they needed for some reason?
>>
>> -Alex
>>
>> Example:
>> $ more Pipelines-3.4.0/global/config/FreeSurferAllLut.txt | grep -A1 -n
>> UNKNOWN
>> 743:CTX-LH-UNKNOWN
>> 744-1000 25 5 25 255
>> --
>> 815:CTX-RH-UNKNOWN
>> 816-2000 25 5 25 255
>> --
>> 887:WM-LH-UNKNOWN
>> 888-3000 230 250 230 255
>> --
>> 959:WM-RH-UNKNOWN
>> 960-4000 230 250 230 255
>> --
>> 1031:CTX-LH-UNKNOWN
>> 1032-1100 0 0 0 255
>> --
>> 1213:CTX-RH-UNKNOWN
>> 1214-2100 0 0 0 255
>> --
>> 1395:WM-LH-UNKNOWN
>> 1396-3100 0 0 0 255
>> --
>> 1559:WM-RH-UNKNOWN
>> 1560-4100 0 0 0 255
>> --
>> 1923:CTX_LH_UNKNOWN
>> 1924-11100 0 0 0 255
>> --
>> 2075:CTX_RH_UNKNOWN
>> 2076-12100 0 0 0 255
>> --
>> 2227:WM_LH_UNKNOWN
>> 2228-13100 0 0 0 255
>> --
>> 2379:WM_RH_UNKNOWN
>> 2380-14100 0 0 0 255
>>
>>
>> ----------------------------------------------------------------
>> *Alexander Li Cohen, M.D., Ph.D.*
>> Resident Physician
>> Child and Adolescent Neurology
>> E-mail: cohen.alexan...@mayo.edu (Medical/Science Email)
>> E-mail: alexco...@gmail.com (Lifetime Email)
>>
>> *Mayo Clinic*
>> 200 First Street SW
>> Rochester, MN 55905
>> mayoclinic.org
>> ----------------------------------------------------------------
>>
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>> HCP-Users@humanconnectome.org
>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>>
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