Dear Human Connectome project experts, I ran PreFreeSurfer & FreeSurfer shell scripts. As input data I used the second set of Example data on which gradient distortion correction has already been performed.
Both PreFreeSurferPipelineBatch.sh and FreeSurferPipelineBatch.sh finished successfully. Both pipelines: 3.3.3 and 3.6.0-GEFM give a small discrepancy between the statistical results (T1w/100307/stats) compare with your results. The thickness difference is in the second or third digit after the decimal point (see the attached file for the some of lh.aparc.a2009s.stats) The output file message: recon-all - s 100307 finished without error; FreeSurferPipelineBatch.sh completed. The error file starts with: (standard_in) 2: Error: comparison in expression Reading 2 control points... I use: freesurfer-hpc, fsl, python-2.7.2 in CentOS 6.5 Linux . Can you explain the difference and the error message? Thank you. best Peka _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
conectome_Parcellation_Volume_testPipline_16apr15.xlsx
Description: MS-Excel 2007 spreadsheet
