When displaying them in the GUI, select the "border" input mode, select "edit" in the added toolbar, make sure "properties" is depressed, then click on a border, then you get a popup where you can edit border colors. Then, save the file from the GUI and it will have those colors.
There is currently no command to set border colors, but the -label-to-border command will use the label color as the output border color. Unfortunately it looks like -border-merge may not currently preserve colors (there can be conflicts between files that I'd need to figure out what to do with). Tim On Mon, Nov 30, 2015 at 4:30 PM, Yizhou Ma <maxxx...@umn.edu> wrote: > This worked for me. Thanks! > > And how can I change the display of the border? Like the color and width? > I used -border-merge to merge all the borders and > -border-export-color-table to get the color table. Is there a way I can > save a border file with my own color table? > > Thanks, > Cherry > > On Mon, Nov 30, 2015 at 4:01 PM, Timothy Coalson <tsc...@mst.edu> wrote: > >> The -label-to-border command requires gifti label files, as it does one >> surface at a time - there is not a cifti version of this command (because >> border files are surface only and single hemisphere, and there is no >> equivalent volume operation). So, first -cifti-separate to get gifti label >> files: >> >> wb_command -cifti-separate melodic_IC_ftb.dlabel.nii -label CORTEX_LEFT >> test.L.label.gii -label CORTEX_RIGHT test.R.label.gii >> >> Then you can use -label-to-border: >> >> wb_command >> -label-to-border Q1-Q6_R440.L.inflated.32k_fs_LR.surf.gii test.L.label.gii >> test.L.border >> wb_command >> -label-to-border Q1-Q6_R440.R.inflated.32k_fs_LR.surf.gii test.R.label.gii >> test.R.border >> >> Note that cifti files generally can only be used with operations that >> begin with -cifti (there are some exceptions, like -nifti-information, >> -file-information, -set-map-names, -add-to-spec-file, -file-convert, ...) >> >> Tim >> >> >> On Mon, Nov 30, 2015 at 3:34 PM, Yizhou Ma <maxxx...@umn.edu> wrote: >> >>> Dear HCP experts, >>> >>> I am trying to create borders based on HCP's .dlabel files. I am working >>> on the FTB labels in the ICA PTN results. The reference surface I use is >>> the R440 template, inflated surface. Here's the command I used: >>> >>> wb_command -label-to-border Q1-Q6_R440.L.inflated.32k_fs_LR.surf.gii >>> melodic_IC_ftb.dlabel.nii test.border >>> >>> I got the following error message: >>> >>> ERROR: Parse Error while reading melodic_IC_ftb.dlabel.nii: error >>> occurred while parsing element line number: 1 column number: 1 >>> >>> Could somebody please help me with this? >>> >>> Thank you very much, >>> Cherry >>> >>> _______________________________________________ >>> HCP-Users mailing list >>> HCP-Users@humanconnectome.org >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >>> >> >> > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
