Hi
> On 9 Mar 2016, at 15:24, Harms, Michael <mha...@wustl.edu> wrote:
>
>
> Hi Steve,
> I’m not seeing a file by that name in the HCP FIX processing.
apologies - I was looking at an example folder from when we trained FIX....
that's the hand training output - which wasn't what was asked for here - sorry!
>
> In the 900 subject release data, there should be files in the
> rfMRI_REST?_{LR,RL}_hp2000.ica folders called Noise.txt and Signal.txt that
> contain the classifications. But those files are created as part of a
> “PostFix” script, rather than the initial FIX script itself. And, I don’t
> think those particular files were created as part of the 500 subject release
> packages.
>
> However, if you are using 500 subject release data, you can find the noise
> components in the rfMRI_REST?_{LR,RL}_hp2000.ica/.fix file (note that it is
> dot fix, so unfortunately that info is a bit hidden in the 500 subject
> release data). The Signal components are then all the other components not
> specified in the .fix file.
>
> cheers,
> -MH
>
> --
> Michael Harms, Ph.D.
>
> -----------------------------------------------------------
> Conte Center for the Neuroscience of Mental Disorders
> Washington University School of Medicine
> Department of Psychiatry, Box 8134
> 660 South Euclid Ave.
> Tel: 314-747-6173
> St. Louis, MO 63110
> Email: mha...@wustl.edu
>
>
>
> On 3/9/16, 2:10 AM, "hcp-users-boun...@humanconnectome.org
> <mailto:hcp-users-boun...@humanconnectome.org> on behalf of Stephen Smith"
> <hcp-users-boun...@humanconnectome.org
> <mailto:hcp-users-boun...@humanconnectome.org> on behalf of
> st...@fmrib.ox.ac.uk <mailto:st...@fmrib.ox.ac.uk>> wrote:
>
> Hi - it's the same as in standard FIX usage - the file listing bad components
> is called hand_labels_noise.txt - inside the ICA output folder.
> Cheers
>
>
>> On 9 Mar 2016, at 03:25, Ely, Benjamin <benjamin....@mssm.edu
>> <mailto:benjamin....@mssm.edu>> wrote:
>> Hi all,
>> I’m interested in running some analyses (particularly smoothness
>> estimations) on the noise components identified by ICA-FIX. I’ve looked
>> through several subjects’ ICA folders (e.g.,
>> rfMRI_REST1_LR_hp2000.ica/filtered_func_data.ica/), which contain a number
>> of output stats and nifti files, but I can’t find an indication of which
>> components were classified as “good” and “bad”. Is this information
>> available?
>> Thanks!
>> -Ely
>> _______________________________________________
>> HCP-Users mailing list
>> HCP-Users@humanconnectome.org <mailto:HCP-Users@humanconnectome.org>
>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>> <http://lists.humanconnectome.org/mailman/listinfo/hcp-users>
>
> ---------------------------------------------------------------------------
> Stephen M. Smith, Professor of Biomedical Engineering
> Head of Analysis, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> st...@fmrib.ox.ac.uk <mailto:st...@fmrib.ox.ac.uk>
> http://www.fmrib.ox.ac.uk/~steve <http://www.fmrib.ox.ac.uk/~steve>
> ---------------------------------------------------------------------------
>
> Stop the cultural destruction of Tibet
>
>
>
>
>
>
> _______________________________________________
> HCP-Users mailing list
> HCP-Users@humanconnectome.org <mailto:HCP-Users@humanconnectome.org>
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
> <http://lists.humanconnectome.org/mailman/listinfo/hcp-users>
>
>
>
> The materials in this message are private and may contain Protected
> Healthcare Information or other information of a sensitive nature. If you are
> not the intended recipient, be advised that any unauthorized use, disclosure,
> copying or the taking of any action in reliance on the contents of this
> information is strictly prohibited. If you have received this email in error,
> please immediately notify the sender via telephone or return mail.
---------------------------------------------------------------------------
Stephen M. Smith, Professor of Biomedical Engineering
Head of Analysis, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
st...@fmrib.ox.ac.uk http://www.fmrib.ox.ac.uk/~steve
<http://www.fmrib.ox.ac.uk/~steve>
---------------------------------------------------------------------------
Stop the cultural destruction of Tibet <http://smithinks.net/>
_______________________________________________
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users
