Hi Grace, You might also want to check out the instructions for creating individual and group average dense rfMRI connectomes in item #3 in the HCP Users FAQ on our wiki: https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ#HCPUsersFAQ-3.IseethatHCPdistributesgroupaveragedenseconnectomefiles.Doyoualsoprovideconnectivitymatricesforindividualsubjects?
<https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ#HCPUsersFAQ-3.IseethatHCPdistributesgroupaveragedenseconnectomefiles.Doyoualsoprovideconnectivitymatricesforindividualsubjects?> Also, sign up for the HCP-Users list<https://www.humanconnectome.org/contact/#subscribe> to learn from other users and stay in the discussion. Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of Neuroscience, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387<tel:314-362-9387> e...@wustl.edu<mailto:e...@wustl.edu> www.humanconnectome.org<http://www.humanconnectome.org/> ________________________________ From: hcp-users-boun...@humanconnectome.org <hcp-users-boun...@humanconnectome.org> on behalf of Shearrer, Grace <grac...@email.unc.edu> Sent: Wednesday, January 4, 2017 1:24:49 PM To: aus...@gmail.com; HCP-Users@humanconnectome.org Subject: Re: [HCP-Users] Creating Group Average Resting State fMRI Hi Dr. Bari, thank you so much for script this is very helpful. I just want to check that I understand. I would use your script to get the mean time series, standard deviation, and then demean the data. Then I would use a command like: wb_command -cifit-merge to then merge all my demeaned data into a a single file, then I would use: wb_command -cifit-correlation to get a correlation matrix from which I could begin to use a graph theory toolkit (like brain connectivity tool box). Does this make sense? This is my first time using CIFTI files and I am still trying to wrap my head around it. Thanks, Grace This question is based on the following thread: http://www.mail-archive.com/hcp-users@humanconnectome.org/msg00448.html Grace Shearrer, PhD Post Doctoral Researcher Neuropsychology of Ingestive Behavior Lab University of North Carolina Chapel Hill _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
