Perhaps you should specify a specific output directory with -o. Peace,
Matt. From: wtj <1257735...@qq.com<mailto:1257735...@qq.com>> Date: Friday, May 26, 2017 at 11:51 PM To: Matt Glasser <glass...@wustl.edu<mailto:glass...@wustl.edu>> Subject: 答复: 答复: [HCP-Users] GIFTI surface data Hi, I use melodic commandline of latest version FSL and my command line scrpt is: melodic –i /home/Tianjie/projects/WU-Minn_HCP_Lifespan_Pilot_Data_structure_preprocess/LS2001/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_Atlas.dtseries.nii An exception has been thrown Cannot create directory /home/Tianjie/projects/WU-Minn_HCP_Lifespan_Pilot_Data_structure_preprocess/LS2001/MNINonLinear/Results/rfMRI_REST1_LR/rfMRI_REST1_LR_Atlas.dtseries.ica++++++++++++++++++++ What’s the problem? Thanks. 发件人: Glasser, Matthew [mailto:glass...@wustl.edu] 发送时间: 2017年5月25日 8:27 收件人: wtj <1257735...@qq.com<mailto:1257735...@qq.com>>; hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org> 主题: Re: 答复: [HCP-Users] GIFTI surface data You might need to use the command line version of the latest FSL. The latest version of melodic does natively work with CIFTI. Peace, Matt. From: wtj <1257735...@qq.com<mailto:1257735...@qq.com>> Date: Wednesday, May 24, 2017 at 7:21 PM To: Matt Glasser <glass...@wustl.edu<mailto:glass...@wustl.edu>> Subject: 答复: [HCP-Users] GIFTI surface data Hi, When I do ICA using MELODIC ICA button in FSL,I selected a .dtseries.nii file, then something went wrong. child process exited abnormally child process exited abnormally while executing "exec sh -c "${FSLDIR}/bin/fslnvols $thefile 2> /dev/null" " (procedure "feat5:updateimageinfo" line 9) invoked from within "feat5:updateimageinfo $w $i 1" (procedure "feat5:multiple_check" line 63) invoked from within "feat5:multiple_check .r 0 1 1 d" invoked from within ".dialog1.cancel invoke" ("uplevel" body line 1) invoked from within "uplevel #0 [list $w invoke]" (procedure "tk::ButtonUp" line 22) invoked from within "tk::ButtonUp .dialog1.cancel" (command bound to event) Thanks. 发件人: Glasser, Matthew [mailto:glass...@wustl.edu] 发送时间: 2017年5月24日 9:54 收件人: wtj <1257735...@qq.com<mailto:1257735...@qq.com>>; hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org> 主题: Re: [HCP-Users] GIFTI surface data No you would use the CIFTI file. It would be called ${StudyFolder}/${Subject]/MNINonLinear/Results/${fMRIName}/${fMRIName}_Atlas.dtseries.nii. You would ideally run it through ICA+FIX first before analyzing it. Peace, Matt. From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of wtj <1257735...@qq.com<mailto:1257735...@qq.com>> Date: Tuesday, May 23, 2017 at 8:49 PM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] GIFTI surface data Hi, I use the lifespan rfMRI data. After preprocessing, there is a file in /subject/MNINonLinear/Results/rfMRI_REST1_LR named rfMRI_REST1_LR.L.native.func.gii with size, for example, 130576*420. Is this file the cortical BOLD signal time series data? Can I use it to do rfMRI analysis? Thanks. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
