Hello, I am having trouble running the diffusion preprocessing. Once the processing gets to eddy_postproc.sh I get the following error: *awk: cmd. line:1: fatal: cannot open file `/home/lnpi15-raid3/cgilmore-data-lnpi15/272_CENC/49769/Diffusion/eddy/eddy_unwarped_images.eddy_rotated_bvecs*. The error is pretty straightforward, but I cannot figure out why the diffusion preprocessing scripts are not generating the *eddy_unwarped_images.eddy_rotated_bvecs *file. I notice that there is a file named *eddy_unwarped_images.eddy_parameters*. Is this similar to the rotated bvec file?
Thanks! -Tim Timothy Hendrickson Department of Psychiatry University of Minnesota Bioinformatics and Computational Biology M.S. Candidate Office: 612-624-6441 Mobile: 507-259-3434 (texts okay) _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
