The pipeline is capable of doing the merge for you if you want. Can you post how you called the diffusion pipeline?
Peace, Matt. From: Yeun Kim <yeun...@gmail.com<mailto:yeun...@gmail.com>> Date: Monday, July 17, 2017 at 1:12 PM To: Matt Glasser <glass...@wustl.edu<mailto:glass...@wustl.edu>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] diffusion data merge pipeline When I run DiffusionPreprocessing, I make the --dwiname=DWIName specific to the diffusion scan (i.e. DWIName= Diffusion_dir-98_run-01) to prevent files from being overwritten. I end up with: ${StudyFolder}/${Subject}/T1w/Diffusion_dir-98_run-01/data.nii.gz ${StudyFolder}/${Subject}/T1w/Diffusion_dir-99_run-01/data.nii.gz I would like to combine the two data.nii.gz files. On Mon, Jul 17, 2017 at 10:58 AM, Glasser, Matthew <glass...@wustl.edu<mailto:glass...@wustl.edu>> wrote: Look for the ${StudyFolder}/${Subject}/T1w/Diffusion/data.nii.gz file. Peace, Matt. From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Yeun Kim <yeun...@gmail.com<mailto:yeun...@gmail.com>> Date: Monday, July 17, 2017 at 12:56 PM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] diffusion data merge pipeline Hi, We have the diffusion scans: dMRI_dir98_AP, dMRI_dir98_PA dMRI_dir99_AP, dMRI_dir99_PA in which there is a pair of phase encoding directions (AP,PA) and two sets of different diffusion weighting directions (dir98 and dir99). After running the DiffusionPreprocessing module of the HCP minimal preprocessing pipeline, I would like to merge the processed dMRI_dir98 and dMRI_dir99 data. Do you have any suggestions on how to perform this step? Also, are there any workflows developed by HCP for post-DiffusionPreprocessing? Thank you, Yeun _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
