Hi, The Movement_RelativeRMS.txt files aren’t part of the specific “${run}_FIX” resource that you tried to reference.
If you have access to outputs in our standard file/directory organization (e.g., Amazon S3, Connectome-in-a-Box, or our downloaded “packages”), the Movement_RelativeRMS.txt files can be found at ${subj}/MNINonLinear/Results/${run}. If not, the “CREST” resource (search the previous HCP-User emails) is what we are intending users to use, which is intended to mimic the standard file/directory organization in terms of where files are located. See FAQ 15 here https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ and the archived user list posts referenced therein. Regarding your item (2), I just confirmed that Movement_Regressors.txt exists for all 4 REST runs for all 6 of those subjects at MNINonLinear/Results/${run} in our unpacked packages, and thus should exist in Amazon S3, Connectome-in-a-Box, and via the CREST resource as well. Cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Associate Professor of Psychiatry Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mha...@wustl.edu From: <hcp-users-boun...@humanconnectome.org> on behalf of Leonardo Tozzi <lto...@stanford.edu> Date: Tuesday, May 14, 2019 at 3:50 PM To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: [HCP-Users] Downloading movement regressors from HYA release Dear Experts, Similarly to what described in this thread: https://www.mail-archive.com/hcp-users@humanconnectome.org/msg01342.html I have downloaded motion regressors for files from the healthy young adult release with the following command: curl -o …/${sub}_${run}_Movement_ Regressors.txt -u USER:PASSWORD https://db.humanconnectome.org/data/projects/HCP_1200/subjects/${sub}/experiments/${sub}_3T/resources/${run}_FIX/files/${run}/Movement_Regressors.txt However, I have 2 follow-up questions. 1. I would like to download the relative motion file, Movement_RelativeRMS.txt, to do some motion censoring on the resting state data. But if I try the same command with Movement_RelativeRMS.txt instead of Movement_Regressors.txt I get an error saying that the file does not exist. 2. For some subjects, I can’t find even the Movement_Regressors.txt. Is there any reason for this? These are the IDs: '127226' '130114' '169040' '329844' '908860' '971160' Thank you, Leonardo Tozzi, MD, PhD Williams PanLab | Postdoctoral Fellow Stanford University | 401 Quarry Rd lto...@stanford.edu<mailto:lto...@stanford.edu> | (650) 5615738 _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users