(ii) Yes that is the right file. I would use the already concatenated one from MR+FIX, else you need to use the _vn files to concatenate yourself (demean, divide by _vn files, and merge).
Matt. From: <hcp-users-boun...@humanconnectome.org> on behalf of Timothy Coalson <tsc...@mst.edu> Date: Friday, June 21, 2019 at 2:20 PM To: Marta Moreno <mmorenoort...@icloud.com> Cc: HCP Users <hcp-users@humanconnectome.org> Subject: Re: [HCP-Users] table for parcellation (i) You can use wb_command -cifti-label-export-table on the dlabel file to get the order of the parcels in a fixed format, though there are extra lines and numbers in the output text file. 360 parcels is a rather long table, you might consider a matrix figure instead, and only mention the highlights. If you make the figure in wb_view, then you can upload the scene to BALSA, which will include the data files used to make it, allowing others to use your data directly instead of looking through a table. Someone else will need to answer (ii). Tim On Thu, Jun 20, 2019 at 10:32 PM Marta Moreno <mmorenoort...@icloud.com<mailto:mmorenoort...@icloud.com>> wrote: Dear experts, After running: 1. PreFreeSurfer 2. FreeSurfer 3. PostFreeSurfer 4. fMRIVolume 5. fMRISurface 6. ICA+FIX (MR+FIX) 7. MSMAll (Do MSM Surface Registration) 8. dedrift and resample pipeline 2 questions: (i) I used wb_command -cifti-parcellate and wb_command -cifti-correlation to create a parcellation.pconn.nii file per each subject. I have uploaded all files into matlab and now would like to create a table that includes all subjects’ correlation value from parcel 264 to all 360 parcels, and include the variable names for all 360 parcels. How can I do this? (ii) Is the file “RS_fMRI_MR_Atlas_MSMAll_Test_hp0_clean.dtseries.nii” the final step after (8) to use for wb_command -cifti-parcellate and wb_command -cifti-correlation Thanks, L. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
