Dear hdf5 users
I'm trying to build HDF5 library in ubuntu 12.04 64bit LTS using gcc 4.7.3
$ ./configure --prefix=/opt/hdf5 --with-szlib=/opt/hdf5
--with-zlib=/opt/hdf5 \
$ make check
('szlib' and 'zlib' are already installed in /opt/hdf5)
And I got 8 fails during running 'make check' as below.
I've installed hdf5 tools from ubuntu software center and checked 'h5dump'
worked fine but test didn't make it.
It seems that there is no posts to refer for the problem in this forum.
Please help this newbie.
Thank you in advance.
==============================
H5IMPORT tests started
==============================
Testing ASCII I32 rank 3 - Output BE
h5importtestutil.sh: line 165: ../h5dump: Is a directory
h5importtestutil.sh: line 168: ../h5dump: No such file or directory
PASSED
Testing ASCII I16 rank 3 - Output LE - CHUNKED - extended
h5importtestutil.sh: line 165: ../h5dump: Is a directory
h5importtestutil.sh: line 168: ../h5dump: No such file or directory
PASSED
Testing ASCII I8 - rank 3 - Output I8 LE-Chunked+Extended+Compressed
h5importtestutil.sh: line 165: ../h5dump: Is a directory
h5importtestutil.sh: line 168: ../h5dump: No such file or directory
PASSED
Testing ASCII UI16 - rank 2 - Output LE+Chunked+Compressed
h5importtestutil.sh: line 165: ../h5dump: Is a directory
h5importtestutil.sh: line 168: ../h5dump: No such file or directory
PASSED
Testing ASCII UI32 - rank 3 - Output BE
h5importtestutil.sh: line 165: ../h5dump: Is a directory
h5importtestutil.sh: line 168: ../h5dump: No such file or directory
PASSED
Testing ASCII F32 - rank 3 - Output LE
h5importtestutil.sh: line 165: ../h5dump: Is a directory
h5importtestutil.sh: line 168: ../h5dump: No such file or directory
PASSED
Testing ASCII F64 - rank 3 - Output BE + CHUNKED+Extended+Compressed
h5importtestutil.sh: line 165: ../h5dump: Is a directory
h5importtestutil.sh: line 168: ../h5dump: No such file or directory
PASSED
Testing BINARY F64 - rank 3 - Output LE+CHUNKED+Extended+Compressed
h5importtestutil.sh: line 165: ../h5dump: Is a directory
h5importtestutil.sh: line 168: ../h5dump: No such file or directory
PASSED
Testing H5DUMP-BINARY F64 - rank 3 - Output
LE+CHUNKED+Extended+Compreh5importtestutil.sh: line 186: ../h5dump: Is a
directory
One or more of the required fields (RANK, DIMENSION-SIZES) missing.
Configuration parameters are invalid in dbinfp64.h5.dmp.
Error in processing the configuration file: dbinfp64.h5.dmp.
Program aborted.
HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0:
#000: H5L.c line 824 in H5Lexists(): unable to get link info
major: Symbol table
minor: Object not found
#001: H5L.c line 2765 in H5L_exists(): path doesn't exist
major: Symbol table
minor: Object already exists
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal
failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 755 in H5G_traverse_real(): component not found
major: Symbol table
minor: Object not found
*FAILED*
Testing BINARY I8 - rank 3 - Output I16LE +
Chunked+Extended+Compresseh5importtestutil.sh: line 165: ../h5dump: Is a
directory
h5importtestutil.sh: line 168: ../h5dump: No such file or directory
PASSED
Testing H5DUMP-BINARY I8 - rank 3 - Output I16LE +
Chunked+Extended+Coh5importtestutil.sh: line 186: ../h5dump: Is a directory
One or more of the required fields (RANK, DIMENSION-SIZES) missing.
Configuration parameters are invalid in dbinin8.h5.dmp.
Error in processing the configuration file: dbinin8.h5.dmp.
Program aborted.
HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0:
#000: H5L.c line 824 in H5Lexists(): unable to get link info
major: Symbol table
minor: Object not found
#001: H5L.c line 2765 in H5L_exists(): path doesn't exist
major: Symbol table
minor: Object already exists
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal
failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 755 in H5G_traverse_real(): component not found
major: Symbol table
minor: Object not found
*FAILED*
Testing BINARY I16 - rank 3 - Output order LE + CHUNKED + extended
h5importtestutil.sh: line 165: ../h5dump: Is a directory
h5importtestutil.sh: line 168: ../h5dump: No such file or directory
PASSED
Testing H5DUMP-BINARY I16 - rank 3 - Output order LE + CHUNKED +
extenh5importtestutil.sh: line 186: ../h5dump: Is a directory
One or more of the required fields (RANK, DIMENSION-SIZES) missing.
Configuration parameters are invalid in dbinin16.h5.dmp.
Error in processing the configuration file: dbinin16.h5.dmp.
Program aborted.
HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0:
#000: H5L.c line 824 in H5Lexists(): unable to get link info
major: Symbol table
minor: Object not found
#001: H5L.c line 2765 in H5L_exists(): path doesn't exist
major: Symbol table
minor: Object already exists
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal
failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 755 in H5G_traverse_real(): component not found
major: Symbol table
minor: Object not found
*FAILED*
Testing BINARY I32 - rank 3 - Output BE + CHUNKED
h5importtestutil.sh: line 165: ../h5dump: Is a directory
h5importtestutil.sh: line 168: ../h5dump: No such file or directory
PASSED
Testing H5DUMP-BINARY I32 - rank 3 - Output BE + CHUNKED
h5importtestutil.sh: line 186: ../h5dump: Is a directory
One or more of the required fields (RANK, DIMENSION-SIZES) missing.
Configuration parameters are invalid in dbinin32.h5.dmp.
Error in processing the configuration file: dbinin32.h5.dmp.
Program aborted.
HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0:
#000: H5L.c line 824 in H5Lexists(): unable to get link info
major: Symbol table
minor: Object not found
#001: H5L.c line 2765 in H5L_exists(): path doesn't exist
major: Symbol table
minor: Object already exists
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal
failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 755 in H5G_traverse_real(): component not found
major: Symbol table
minor: Object not found
*FAILED*
Testing BINARY UI16 - rank 3 - Output byte BE + CHUNKED
h5importtestutil.sh: line 165: ../h5dump: Is a directory
h5importtestutil.sh: line 168: ../h5dump: No such file or directory
PASSED
Testing H5DUMP-BINARY UI16 - rank 3 - Output byte BE + CHUNKED
h5importtestutil.sh: line 186: ../h5dump: Is a directory
One or more of the required fields (RANK, DIMENSION-SIZES) missing.
Configuration parameters are invalid in dbinuin16.h5.dmp.
Error in processing the configuration file: dbinuin16.h5.dmp.
Program aborted.
HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0:
#000: H5L.c line 824 in H5Lexists(): unable to get link info
major: Symbol table
minor: Object not found
#001: H5L.c line 2765 in H5L_exists(): path doesn't exist
major: Symbol table
minor: Object already exists
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal
failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 755 in H5G_traverse_real(): component not found
major: Symbol table
minor: Object not found
*FAILED*
Testing BINARY UI32 - rank 3 - Output LE + CHUNKED
h5importtestutil.sh: line 165: ../h5dump: Is a directory
h5importtestutil.sh: line 168: ../h5dump: No such file or directory
PASSED
Testing H5DUMP-BINARY UI32 - rank 3 - Output LE + CHUNKED
h5importtestutil.sh: line 186: ../h5dump: Is a directory
One or more of the required fields (RANK, DIMENSION-SIZES) missing.
Configuration parameters are invalid in dbinuin32.h5.dmp.
Error in processing the configuration file: dbinuin32.h5.dmp.
Program aborted.
HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0:
#000: H5L.c line 824 in H5Lexists(): unable to get link info
major: Symbol table
minor: Object not found
#001: H5L.c line 2765 in H5L_exists(): path doesn't exist
major: Symbol table
minor: Object already exists
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal
failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 755 in H5G_traverse_real(): component not found
major: Symbol table
minor: Object not found
*FAILED*
Testing STR
h5importtestutil.sh: line 165: ../h5dump: Is a directory
h5importtestutil.sh: line 168: ../h5dump: No such file or directory
PASSED
Testing H5DUMP-STR
h5importtestutil.sh: line 228: ../h5dump: Is a directory
One or more of the required fields (RANK, DIMENSION-SIZES) missing.
Configuration parameters are invalid in dtxtstr.h5.dmp.
Error in processing the configuration file: dtxtstr.h5.dmp.
Program aborted.
HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0:
#000: H5L.c line 824 in H5Lexists(): unable to get link info
major: Symbol table
minor: Object not found
#001: H5L.c line 2765 in H5L_exists(): path doesn't exist
major: Symbol table
minor: Object already exists
#002: H5Gtraverse.c line 861 in H5G_traverse(): internal path traversal
failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 755 in H5G_traverse_real(): component not found
major: Symbol table
minor: Object not found
*FAILED*
Testing BINARY I8 CR LF EOF
h5importtestutil.sh: line 165: ../h5dump: Is a directory
h5importtestutil.sh: line 168: ../h5dump: No such file or directory
PASSED
Testing H5DUMP-BINARY I8 CR LF EOF
h5importtestutil.sh: line 186: ../h5dump: Is a directory
One or more of the required fields (RANK, DIMENSION-SIZES) missing.
Configuration parameters are invalid in dbinin8w.h5.dmp.
Error in processing the configuration file: dbinin8w.h5.dmp.
Program aborted.
*FAILED*
Testing ASCII F64 - rank 1 - INPUT-CLASS TEXTFPE
h5importtestutil.sh: line 165: ../h5dump: Is a directory
h5importtestutil.sh: line 168: ../h5dump: No such file or directory
PASSED
h5import tests failed with 8 errors.
Command exited with non-zero status 1
0.28user 0.24system 0:01.44elapsed 36%CPU (0avgtext+0avgdata
17280maxresident)k
0inputs+792outputs (0major+376347minor)pagefaults 0swaps
make[5]: *** [h5importtestutil.sh.chkexe_] Error 1
make[5]: Leaving directory
`/home/dokeun/Downloads/hdf5-1.8.11/tools/h5import'
make[4]: *** [build-check-s] Error 2
make[4]: Leaving directory
`/home/dokeun/Downloads/hdf5-1.8.11/tools/h5import'
make[3]: *** [test] Error 2
make[3]: Leaving directory
`/home/dokeun/Downloads/hdf5-1.8.11/tools/h5import'
make[2]: *** [check-am] Error 2
make[2]: Leaving directory
`/home/dokeun/Downloads/hdf5-1.8.11/tools/h5import'
make[1]: *** [check-recursive] Error 1
make[1]: Leaving directory `/home/dokeun/Downloads/hdf5-1.8.11/tools'
make: *** [check-recursive] Error 1
--
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