(typo -- "jmol" extension is just a Jmol equivalent of "zip" the way "jar" is for Java)
On Thu, Aug 19, 2010 at 11:37 AM, Robert Hanson <hans...@stolaf.edu> wrote: > In case that was too cryptic. > > 0) get the picture you want. > 1) create the jvxl file: write "xxx.jvxl" > 2) replace the surface with the jvxl equivalent: isosurface "xxx.jvxl" > 3) create a manifested zip file: write "xxx.jmol" > > Then when you load xxx.jmol, Jmol should load the file, load the surface, > and display it all exactly the way you had it. If it doesn't, let me know. > > Bob > > > > On Thu, Aug 19, 2010 at 11:30 AM, Robert Hanson <hans...@stolaf.edu>wrote: > >> write xxx.zip >> >> >> >> >> On Mon, Aug 16, 2010 at 4:44 AM, <jaime.prilu...@weizmann.ac.il> wrote: >> >>> Dear Jmol, >>> >>> Is there a way to save Jmol state with the pre-calculated surface? >>> >>> We can save the Jmol state, and render the structure with the same >>> look, orientation, etc. However, if the state contains a surface >>> calculation, the surface is recalculated again on load. >>> >>> On the other side, I can save to .jvxl the surface alone ... >>> >>> Can we combine both? >>> Or the option is to reload state and then load jvxl? >>> >>> Thanks, >>> Jaim >>> -- >>> Dr Jaime Prilusky | jaime.prilu...@weizmann.ac.il >>> Head Bioinformatics | >>> R&D Bioinformatics and Data Management | >>> Department of Biological Services | >>> Weizmann Institute of Science | fax: 972-8-9344113 >>> 76100 Rehovot - Israel | tel: 972-8-9344959 >>> >>> OCA, http://oca.weizmann.ac.il (the protein structure/function >>> database) >>> Proteopedia, http://proteopedia.org (because life has more than 2D) >>> ------------------------------------------------------------------------ >>> >>> >>> ------------------------------------------------------------------------------ >>> This SF.net email is sponsored by >>> >>> Make an app they can't live without >>> Enter the BlackBerry Developer Challenge >>> http://p.sf.net/sfu/RIM-dev2dev >>> _______________________________________________ >>> Jmol-users mailing list >>> Jmol-users@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >> >> >> >> -- >> Robert M. Hanson >> Professor of Chemistry >> St. Olaf College >> 1520 St. Olaf Ave. >> Northfield, MN 55057 >> http://www.stolaf.edu/people/hansonr >> phone: 507-786-3107 >> >> >> If nature does not answer first what we want, >> it is better to take what answer we get. >> >> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> > > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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