not aware of any volunteers.
On Tue, Aug 23, 2016 at 10:40 AM, Spencer Bliven <spencer.bli...@gmail.com>
wrote:
> I just wanted to bump this thread. Any chance of getting a new maven
> maintainer added soon?
>
> Cheers,
> Spencer
>
> On Fri, Aug 12, 2016 at 10:19 AM, Spencer Bliven <spencer.bli...@gmail.com
> > wrote:
>
>> So I guess the next step that needs to happen is for Nico to request that
>> Mark get added to the OSS ticket. I haven't been an active Jmol
>> contributor, but I'd be happy to help with maintaining the maven package if
>> you want to add me too (OSS user sbliven).
>>
>> -Spencer
>>
>> On Thu, Aug 11, 2016 at 11:29 PM, Robert Hanson <hans...@stolaf.edu>
>> wrote:
>>
>>> all checked in.
>>>
>>> On Thu, Aug 11, 2016 at 3:09 AM, Spencer Bliven <
>>> spencer.bli...@gmail.com> wrote:
>>>
>>>> Awesome. BioJava has good mmtf support, so if we can get the new Jmol
>>>> release into maven then MMTF might be a good exchange format for passing
>>>> structures to Jmol. We're currently stuck with using PDB and are hurting
>>>> from the limitations (e.g. on chain identifiers & number of atoms).
>>>>
>>>> -Spencer
>>>>
>>>> On Wed, Aug 10, 2016 at 6:41 PM, Robert Hanson <hans...@stolaf.edu>
>>>> wrote:
>>>>
>>>>> Thanks, Spencer. I am in the process of releasing an important update
>>>>> for BioJava, as a matter of fact -- PyMOL 1.8 dump_binary PSE files and
>>>>> the
>>>>> new MMTF format from RCSB (which is FANTASTIC by the way...)
>>>>>
>>>>> Bob
>>>>>
>>>>> On Wed, Aug 10, 2016 at 9:25 AM, Spencer Bliven <
>>>>> spencer.bli...@gmail.com> wrote:
>>>>>
>>>>>> Hey,
>>>>>>
>>>>>> I also took a crack at getting the dist-release command to complete,
>>>>>> since it would be extremely nice to get BioJava using a more recent
>>>>>> version
>>>>>> of Jmol. Using the latest trunk I got all steps to complete by modifying
>>>>>> tools/jmol-sonatype.xml as you suggest to refer to "${Jmol
>>>>>> .properties.Jmol.___JmolVersion}" in line 30. This creates the
>>>>>> build/dist-maven directory as desired.
>>>>>>
>>>>>> Right now only Tomas (plusik) and Nico (nicov) appear to be
>>>>>> authorized to upload to maven central. It would be great if some
>>>>>> additional
>>>>>> people (e.g. Mark, Bob, perhaps even myself if desired) could get added
>>>>>> to
>>>>>> this. Authorization is granted by adding a user to your OSS project
>>>>>> ticket (https://issues.sonatype.org/browse/OSSRH-3633).
>>>>>>
>>>>>> Any work towards a maven release is much appreciated. Let me know if
>>>>>> I can do anything to help with this.
>>>>>>
>>>>>> -Spencer
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Sat, Jul 30, 2016 at 4:39 AM, Robert Hanson <hans...@stolaf.edu>
>>>>>> wrote:
>>>>>>
>>>>>>> I'm not sure how ${Jmol.properties.___JmolVersion} would be the
>>>>>>> version number. In Build.xml it is:
>>>>>>>
>>>>>>> <property name="version"
>>>>>>> value="${Jmol.properties.Jmol.___JmolVersion}"
>>>>>>> />
>>>>>>> <propertyregex property="version"
>>>>>>> override = "true"
>>>>>>> input="${version}"
>>>>>>> regexp='"'
>>>>>>> replace=""
>>>>>>> global="true"
>>>>>>> />
>>>>>>> <echo message="version=${version}" />
>>>>>>>
>>>>>>>
>>>>>>> So you are missing that regex process.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On Mon, Jul 25, 2016 at 9:18 AM, Mark Williamson <m...@mjw.name>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> On 17/05/16 23:15, Robert Hanson wrote:
>>>>>>>> > Will be checking in Jmol 14.6 release as soon as I can. But it's
>>>>>>>> not a
>>>>>>>> Maven release. Someone else has to do that.
>>>>>>>>
>>>>>>>> Sorry for the delay in replying. I have been attempting to use the
>>>>>>>> ant
>>>>>>>> build script, tools/jmol-sonatype.xml, to build some artifacts for
>>>>>>>> deployment to Maven central. Here is my protocol (apologies, I am
>>>>>>>> not
>>>>>>>> that familiar with ant and may have made some basic errors):
>>>>>>>>
>>>>>>>>
>>>>>>>> Preamble
>>>>>>>> ---------
>>>>>>>> 0) Start with a 64 bit install of Ubuntu 14.04.4
>>>>>>>>
>>>>>>>> 1) Install the following packages
>>>>>>>> sudo apt-get install mvn libsaxon-java openjdk-7-jdk ant
>>>>>>>>
>>>>>>>> 2) Create ~/.jmol.build.properties file with contents
>>>>>>>> <property name="keystore.name" value="selfSignedCertificate" />
>>>>>>>>
>>>>>>>>
>>>>>>>> Main
>>>>>>>> ----
>>>>>>>> 1) Obtain the source code and extract
>>>>>>>> wget
>>>>>>>> http://heanet.dl.sourceforge.net/project/jmol/Jmol/Version%2
>>>>>>>> 014.6/Version%2014.6.1/Jmol-14.6.1_2016.07.11-full.tar.gz
>>>>>>>>
>>>>>>>> tar xfvz Jmol-14.6.1_2016.07.11-full.tar.gz
>>>>>>>> cd jmol-14.6.1_2016.07.11
>>>>>>>>
>>>>>>>> 2) Add a required jar to enable docs to be built
>>>>>>>> cp /usr/share/java/saxon.jar ./jars/
>>>>>>>>
>>>>>>>> 3) Build jar target
>>>>>>>> ant jar
>>>>>>>> <input ~/.jmol.build.properties as the private property file >
>>>>>>>>
>>>>>>>> 4) Build dist target
>>>>>>>> ant dist
>>>>>>>> <input ~/.jmol.build.properties as the private property file >
>>>>>>>>
>>>>>>>> This fails with an error stating that “srcjsv does not exist” and
>>>>>>>> this
>>>>>>>> is because I do not have the source to JSpecView in the tree.
>>>>>>>> However,
>>>>>>>> if I should omit the line 1216 in build.xml, for the sake of
>>>>>>>> reaching
>>>>>>>> the next step:
>>>>>>>>
>>>>>>>> <!-- <fileset dir="srcjsv" />-->
>>>>>>>>
>>>>>>>> And proceed to this:
>>>>>>>>
>>>>>>>> ant -f ./tools/jmol-sonatype.xml dist-release
>>>>>>>>
>>>>>>>> Then, the following error is seen:
>>>>>>>> BUILD FAILED
>>>>>>>> /home/mw529/code/jmol/dev/jmol-14.6.1_2016.07.11/tools/jmol-
>>>>>>>> sonatype.xml:91:
>>>>>>>> Warning: Could not find file
>>>>>>>> /home/mw529/code/jmol/dev/jmol-14.6.1_2016.07.11/build/dist/
>>>>>>>> jmol-${Jmol.properties.___JmolVersion}-javadoc.jar
>>>>>>>> to copy.
>>>>>>>>
>>>>>>>>
>>>>>>>> I am guessing that this seems to be some form of mis-parsing of the
>>>>>>>> Jmol.properties.___JmolVersion in the build/dist directory?
>>>>>>>>
>>>>>>>> Do you have any suggestions on how to resolve this?
>>>>>>>>
>>>>>>>> Thanks,
>>>>>>>>
>>>>>>>> Mark
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> ------------------------------------------------------------
>>>>>>>> ------------------
>>>>>>>> What NetFlow Analyzer can do for you? Monitors network bandwidth
>>>>>>>> and traffic
>>>>>>>> patterns at an interface-level. Reveals which users, apps, and
>>>>>>>> protocols are
>>>>>>>> consuming the most bandwidth. Provides multi-vendor support for
>>>>>>>> NetFlow,
>>>>>>>> J-Flow, sFlow and other flows. Make informed decisions using
>>>>>>>> capacity planning
>>>>>>>> reports.http://sdm.link/zohodev2dev
>>>>>>>> _______________________________________________
>>>>>>>> Jmol-users mailing list
>>>>>>>> Jmol-users@lists.sourceforge.net
>>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Robert M. Hanson
>>>>>>> Larson-Anderson Professor of Chemistry
>>>>>>> St. Olaf College
>>>>>>> Northfield, MN
>>>>>>> http://www.stolaf.edu/people/hansonr
>>>>>>>
>>>>>>>
>>>>>>> If nature does not answer first what we want,
>>>>>>> it is better to take what answer we get.
>>>>>>>
>>>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>>>
>>>>>>>
>>>>>>> ------------------------------------------------------------
>>>>>>> ------------------
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Jmol-users mailing list
>>>>>>> Jmol-users@lists.sourceforge.net
>>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>>
>>>>>>>
>>>>>>
>>>>>> ------------------------------------------------------------
>>>>>> ------------------
>>>>>> What NetFlow Analyzer can do for you? Monitors network bandwidth and
>>>>>> traffic
>>>>>> patterns at an interface-level. Reveals which users, apps, and
>>>>>> protocols are
>>>>>> consuming the most bandwidth. Provides multi-vendor support for
>>>>>> NetFlow,
>>>>>> J-Flow, sFlow and other flows. Make informed decisions using capacity
>>>>>> planning reports. http://sdm.link/zohodev2dev
>>>>>> _______________________________________________
>>>>>> Jmol-users mailing list
>>>>>> Jmol-users@lists.sourceforge.net
>>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Robert M. Hanson
>>>>> Larson-Anderson Professor of Chemistry
>>>>> St. Olaf College
>>>>> Northfield, MN
>>>>> http://www.stolaf.edu/people/hansonr
>>>>>
>>>>>
>>>>> If nature does not answer first what we want,
>>>>> it is better to take what answer we get.
>>>>>
>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>
>>>>>
>>>>> ------------------------------------------------------------
>>>>> ------------------
>>>>> What NetFlow Analyzer can do for you? Monitors network bandwidth and
>>>>> traffic
>>>>> patterns at an interface-level. Reveals which users, apps, and
>>>>> protocols are
>>>>> consuming the most bandwidth. Provides multi-vendor support for
>>>>> NetFlow,
>>>>> J-Flow, sFlow and other flows. Make informed decisions using capacity
>>>>> planning reports. http://sdm.link/zohodev2dev
>>>>> _______________________________________________
>>>>> Jmol-users mailing list
>>>>> Jmol-users@lists.sourceforge.net
>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>>
>>>>>
>>>>
>>>> ------------------------------------------------------------
>>>> ------------------
>>>> What NetFlow Analyzer can do for you? Monitors network bandwidth and
>>>> traffic
>>>> patterns at an interface-level. Reveals which users, apps, and
>>>> protocols are
>>>> consuming the most bandwidth. Provides multi-vendor support for NetFlow,
>>>> J-Flow, sFlow and other flows. Make informed decisions using capacity
>>>> planning reports. http://sdm.link/zohodev2dev
>>>> _______________________________________________
>>>> Jmol-users mailing list
>>>> Jmol-users@lists.sourceforge.net
>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>
>>>>
>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Larson-Anderson Professor of Chemistry
>>> St. Olaf College
>>> Northfield, MN
>>> http://www.stolaf.edu/people/hansonr
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
>>>
>>> ------------------------------------------------------------
>>> ------------------
>>> What NetFlow Analyzer can do for you? Monitors network bandwidth and
>>> traffic
>>> patterns at an interface-level. Reveals which users, apps, and protocols
>>> are
>>> consuming the most bandwidth. Provides multi-vendor support for NetFlow,
>>> J-Flow, sFlow and other flows. Make informed decisions using capacity
>>> planning reports. http://sdm.link/zohodev2dev
>>> _______________________________________________
>>> Jmol-users mailing list
>>> Jmol-users@lists.sourceforge.net
>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>>
>>
>
> ------------------------------------------------------------
> ------------------
>
> _______________________________________________
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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