> The wrong numbering is probably due to that latex is not run enough by
> LyX. I think we should try to debug this by exporting to latex and then
> running latex from the terminal.
> 
> As for numbering still showing up on the first page of your list of
> tables, I don't know why that is happening with your LyX document. I
> just ran a test version in pure latex with enough \chapters to generate
> a two-page toc, and enough captions to generate a two-page list of
> tables. Page numbers appeared only on the second page of the toc and
> lot. One reason that toc and lot can be incorrect is that an old
> file.toc and file.lot is on your system and you are not running latex
> enough times. In order to test my file, I removed test.lot and test.toc
> and then ran latex *3* times. I'm not sure how to do this from LyX. 
> 
> I think if you export your file to latex and run it 3 times both
> mistakes should be fixed. 
> 
> How many figures do you have? Could you export the file to latex, save
> it as temp.tex, and get rid of the figures, and then run latex 3 times
> just to see if we've fixed the list of table and toc problem? If you
> have a lot of figures, then you could try this:
> 
> sed -e 's/\\includegraphics{[^}]*}//g' thesis.tex > temp.tex
> 
> This assumes that when you export your document, it is named thesis.tex.
> Change the name to whatever it is. The sed stuff just gets rid of all
> graphics in  your document so that you can run a text.
> 
> However, if your grahics are in child documents, that won't work, since
> missing figures will still show up when you run latex. Let me know if
> there is any way you can export a latex file and run latex on it.
> 
> Paul

Hi Paul, 
    I used the sed command, and made a temp.tex.  But Im still getting
an error:  


~/Thesis$ latex -output-format=pdf
-halt-on-error /home/malespin/Thesis/temp.tex

This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4)
entering extended mode
(/home/malespin/Thesis/temp.tex
LaTeX2e <2003/12/01>
Babel <v3.8d> and hyphenation patterns for american, french, german,
ngerman, b
ahasa, basque, bulgarian, catalan, croatian, czech, danish, dutch,
esperanto, e
stonian, finnish, greek, icelandic, irish, italian, latin, magyar,
norsk, polis
h, portuges, romanian, russian, serbian, slovak, slovene, spanish,
swedish, tur
kish, ukrainian, nohyphenation, loaded.
(/usr/share/texmf-tetex/tex/latex/base/report.cls
Document Class: report 2004/02/16 v1.4f Standard LaTeX document class
(/usr/share/texmf-tetex/tex/latex/base/size10.clo))
(/usr/share/texmf-tetex/tex/latex/base/fontenc.sty
(/usr/share/texmf-tetex/tex/latex/base/t1enc.def))
(/usr/share/texmf-tetex/tex/latex/base/inputenc.sty
(/usr/share/texmf-tetex/tex/latex/base/latin1.def))
(/usr/share/texmf-tetex/tex/latex/geometry/geometry.sty
(/usr/share/texmf-tetex/tex/latex/graphics/keyval.sty)
(/usr/share/texmf-tetex/tex/latex/geometry/geometry.cfg))
(/usr/share/texmf-tetex/tex/latex/tools/array.sty)
(/usr/share/texmf-tetex/tex/latex/graphics/graphicx.sty
(/usr/share/texmf-tetex/tex/latex/graphics/graphics.sty
(/usr/share/texmf-tetex/tex/latex/graphics/trig.sty)
(/usr/share/texmf-tetex/tex/latex/graphics/graphics.cfg)
(/usr/share/texmf-tetex/tex/latex/graphics/pdftex.def)))
(/usr/share/texmf-tetex/tex/latex/setspace/setspace.sty
Package: `setspace' 6.7 <2000/12/01>
) (/usr/share/texmf-tetex/tex/latex/cite/cite.sty)
(/usr/share/texmf-tetex/tex/latex/tools/indentfirst.sty)
(/usr/share/texmf-tetex/tex/generic/babel/babel.sty
(/usr/share/texmf-tetex/tex/generic/babel/english.ldf
(/usr/share/texmf-tetex/tex/generic/babel/babel.def))) (./temp.aux)

Package geometry Warning: The marginal notes would fall off the page.
     Add 3.73001pt and more to the right margin.

-------------------- Geometry parameters
paper: letterpaper
landscape: --
twocolumn: --
twoside: --
asymmetric: --
h-parts: 90.3375pt, 451.68752pt, 72.26999pt
v-parts: 72.26999pt, 650.43001pt, 72.26999pt
hmarginratio: --
vmarginratio: --
lines: --
heightrounded: --
bindingoffset: 0.0pt
truedimen: --
includehead: --
includefoot: --
includemp: --
driver: pdftex
-------------------- Page layout dimensions and switches
\paperwidth  614.295pt
\paperheight 794.96999pt
\textwidth  451.68752pt
\textheight 650.43001pt
\oddsidemargin  18.0675pt
\evensidemargin 18.0675pt
\topmargin  -37.0pt
\headheight 12.0pt
\headsep    25.0pt
\footskip   30.0pt
\marginparwidth 65.0pt
\marginparsep   11.0pt
\columnsep  10.0pt
\skip\footins  9.0pt plus 4.0pt minus 2.0pt
\hoffset 0.0pt
\voffset 0.0pt
\mag 1000

(1in=72.27pt, 1cm=28.45pt)
-----------------------
(/usr/share/texmf-tetex/tex/context/base/supp-pdf.tex
(/usr/share/texmf-tetex/tex/context/base/supp-mis.tex
loading : Context Support Macros / Miscellaneous (2004.10.26)
)
loading : Context Support Macros / PDF (2004.03.26)
) [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
(/usr/share/texmf-tetex/tex/latex/base/omscmr.fd) [2] [3] [4]
(./temp.toc)
[5] (./temp.lot) [6] (./temp.lof) [7]
Chapter 1.
[1]

LaTeX Warning: Citation `key-1' on page 2 undefined on input line 192.


LaTeX Warning: Citation `key-2' on page 2 undefined on input line 208.

[2]

LaTeX Warning: Citation `key-3' on page 3 undefined on input line 249.


LaTeX Warning: Citation `key-4' on page 3 undefined on input line 249.


LaTeX Warning: Citation `key-5' on page 3 undefined on input line 257.


LaTeX Warning: Citation `key-6' on page 3 undefined on input line 293.

[3] <ElementTable2.jpg, id=55, 395.4775pt x 390.45876pt>
<use ElementTable2.jpg>

LaTeX Warning: Citation `key-7' on page 4 undefined on input line 310.

<ElementTable.jpg, id=56, 345.29pt x 466.74374pt> <use ElementTable.jpg>
[4 <./ElementTable2.jpg>]
Error: latex (file "Images/particle size table".jpg): cannot find image
file
 ==> Fatal error occurred, the output PDF file is not finished!

***********
Im guessing it is still looking for some images, but cant find them.  I
have about 40 figures in there right now.. Also, the page numbering is
fine on the Tables list, its the figures list that is wrong.  So..  I
dont know what else to do, seems like this shouldnt be so hard, right?
Thank you for your patience, 
Charles


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