Is there a firewall running on the mandolin machine, or on the routers between it and the machine on which you're running Firefox, which could be blocking incoming connections on port 5430?
Richard. don...@caltech.edu wrote: > Hi Syed, > > Actually, the host name 'mandolin.caltech.edu' is already in the > /etc/hosts file and the web server works well. I follow your suggestion to > try 127.0.0.1, the same trouble happened. could you give me other > suggestion? > Thank you! > > Dong > > >> Hi Dong, >> >> your apache startup error says it all, the apache server doesnt >> recognise your host name (the one which you are specifying in >> settings.conf). You need to modify the /etc/hosts file on your system >> and then restart apache server. Once done, reconfigure BioMart (only >> perl bin/configure.pl....) and restart your apache. A good test would >> be to put 127.0.0.1 in settings.conf and configure Biomart, restart >> apache and see if you can access the webserver on >> http://127.0.0.1:5430/biomart/martview >> >> Stepwise solution can be seen here: >> >> http://digitaldeviation.com/articles/apache-articles/apache-error-could-not-reliably-determine-servers-fully-qualified-domain-na >> >> Good Luck!, >> Syed >> >> >> >> don...@caltech.edu wrote: >>> Hi Syed, >>> >>> here is the output after configure: >>> >>> # perl bin/configure.pl -r conf/spbase_annotation1022_6.xml >>> >>> Do you want to install in API only mode [y/n] [n]: n >>> >>> Checking prerequisites ...[Looks good] >>> >>> APACHE: /usr/sbin/httpd >>> HOST: http://mandolin.caltech.edu >>> PORT: 5430 >>> PROXY: >>> LOCATION: biomart >>> >>> You can change the above configuration by editing >>> "biomart-perl/conf/settings.conf" >>> >>> >>> >>> Got usable Apache in /usr/sbin/httpd, probing for version & ModPerl >>> configuration >>> Have Apache DSO-support and ModPerl library file present, configuring >>> ModPerl in httpd.conf. >>> Libdir /var/www/html/biomart-perl/lib is not in @INC, adding to @INC >>> >>> Processing Cached Registry: >>> /var/www/html/biomart-perl/conf/cachedRegistries/spbase_annotation1022_6.xml.cached >>> >>> # /usr/sbin/httpd -d $PWD -f $PWD/conf/httpd.conf >>> >>> Processing Cached Registry: >>> /var/www/html/biomart-perl/conf/cachedRegistries/spbase_annotation1022_6.xml.cached >>> >>> [Tue Jan 13 10:00:26 2009] [warn] Useless use of AllowOverride in line >>> 131. >>> [Tue Jan 13 10:00:26 2009] [warn] Useless use of AllowOverride in line >>> 139. >>> [Tue Jan 13 10:00:26 2009] [warn] Useless use of AllowOverride in line >>> 158. >>> [Tue Jan 13 10:00:26 2009] [warn] Useless use of AllowOverride in line >>> 169. >>> [Tue Jan 13 10:00:26 2009] [warn] Useless use of AllowOverride in line >>> 185. >>> httpd: Could not reliably determine the server's fully qualified domain >>> name, using mandolin.caltech.edu for ServerName >>> >>> ------------------------------------------------------------------------ >>> attached are the httpd.conf and settings.conf. >>> >>> Thank you very much for your help! >>> >>> Dong >>> >>> >>>> Hi Dong, >>>> >>>> please send me the following: >>>> >>>> - conf/httpd.conf >>>> - on screen output when you run perl bin/configure.pl...... >>>> - conf/settings.conf >>>> >>>> >>>> thanks >>>> Syed >>>> >>>> >>>> don...@caltech.edu wrote: >>>> >>>>> Hi Friends: >>>>> >>>>> I successfully set up a mart in one of my machines, then, I moved >>>>> whole >>>>> mart database into another machine, and the configuring ("perl >>>>> bin/configure.pl -r conf/annotation1022_6.xml", "/usr/sbin/httpd -d >>>>> $PWD >>>>> -f $PWD/conf/httpd.conf")seems work, however, when point web browser >>>>> to >>>>> the corresponding URL, I got a error: "Firefox can't establish a >>>>> connection to the server at mandolin.caltech.edu:5430." does this mean >>>>> mart is not portable? do I have to build mart at each machine >>>>> separately? >>>>> or I missed some httpd configuration? >>>>> Thanks! >>>>> >>>>> Dong >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> > > > -- Richard Holland, BSc MBCS Finance Director, Eagle Genomics Ltd M: +44 7500 438846 | E: holl...@eaglegenomics.com http://www.eaglegenomics.com/
