They've changed the virtualSchemaName as well as the dataset names - you should use 'metazoa_mart_4' instead. Check the XML button in their MartView to see an example and look closely at the opening Query tag.
cheers, Richard On 30 Aug 2010, at 21:05, Gabriel Berriz wrote: > Hi. When I submit the following query to > http://metazoa.ensembl.org/biomart/martservice: > > <Query completionStamp="1" virtualSchemaName="default" uniqueRows="1" > requestId="biomart-client"> > <Dataset interface="default" name="aaegypti_eg_gene"> > <Attribute name="ensembl_gene_id"/> > </Dataset> > </Query> > > > I get the following error: > > Query ERROR: caught BioMart::Exception::Usage: WITHIN Virtual Schema : > default, Dataset aaegypti_eg_gene NOT FOUND > > > I get similar errors in response to the following queries: > > (also to http://metazoa.ensembl.org/biomart/martservice) > > <Query completionStamp="1" virtualSchemaName="default" uniqueRows="1" > requestId="biomart-client"> > <Dataset interface="default" name="agambiae_eg_gene"> > <Attribute name="ensembl_gene_id"/> > </Dataset> > </Query> > > > (to http://plants.ensembl.org/biomart/martservice) > > <Query completionStamp="1" virtualSchemaName="default" uniqueRows="1" > requestId="biomart-client"> > <Dataset interface="default" name="athaliana_eg_gene"> > <Attribute name="ensembl_gene_id"/> > </Dataset> > </Query> > > > In contrast, analogous queries to > http://uswest.ensembl.org/biomart/martservice work fine; for example: > > <Query completionStamp="1" virtualSchemaName="default" uniqueRows="1" > requestId="biomart-client"> > <Dataset interface="default" name="btaurus_gene_ensembl"> > <Attribute name="affy_bovine"/> > </Dataset> > </Query> > > > > Can someone tell me what I'm doing wrong in the failing queries above? > > TIA! > > Gabriel Berriz > > > > ============================================================= > Gabriel F. Berriz, PhD > Senior Bioinformatics Developer > Roth Lab > Biological Chemistry and Molecular Pharmacology -- Harvard Medical School > 250 Longwood Avenue > Seeley G. Mudd Building 322B > Boston, MA 02115-5701 > Telephone: 617.432.3555 > Fax: 617.432.3557 > > > > > -- Richard Holland, BSc MBCS Operations and Delivery Director, Eagle Genomics Ltd T: +44 (0)1223 654481 ext 3 | E: holl...@eaglegenomics.com http://www.eaglegenomics.com/
