Hi Christophe,
Firstly, you dont need to create any meta_registry table for biomart,
please let us have you registry file (off the list since list would
reject attachments) and we investigate whats happening.
Thanks
Syed
On 20/10/2010 15:38, Christophe Klopp wrote:
Dear all,
I'm installing a Mart server using a postgresql database.
The web part work all-right but the database connexion does not.
Biomart seeks a meta_registry table which has not been created by
MartEditor :
DBD::Pg::st execute failed: ERROR: relation
"pycnoporus_mart.meta_registry" does not exist at
/opt/biomart-perl/bin/../lib/BioMart/Configuration/RegistryDBPointer.pm
line 88.
MartEditor has created the following tables :
Table "pycnoporus_mart.augustus__prediction__main"
Table "pycnoporus_mart.meta_conf__dataset__main"
Table "pycnoporus_mart.meta_conf__interface__dm"
Table "pycnoporus_mart.meta_conf__user__dm"
Table "pycnoporus_mart.meta_conf__xml__dm"
Table "pycnoporus_mart.meta_template__template__main"
Table "pycnoporus_mart.meta_template__xml__dm"
Table "pycnoporus_mart.meta_version__version__main"
How can I create this meta_registry table in the database?
Cheers
Christophe
Complete output :
[r...@genome-browser biomart-perl]# perl bin/configure.pl -r
conf/pycnoporusRegistry.xml
Do you want to install in API only mode [y/n] [n]:
Checking prerequisites ...[Looks good]
APACHE: /opt/biomart-perl/apache/bin/httpd
HOST: xxxx
PORT: xxxx
PROXY:
LOCATION: biomart
APXS/2:
You can change the above configuration by editing
"biomart-perl/conf/settings.conf"
Got usable Apache in /opt/biomart-perl/apache/bin/httpd, probing for
version& ModPerl configuration
Have Apache DSO-support and ModPerl library file present, configuring
ModPerl in httpd.conf.
Libdir /opt/biomart-perl/lib is not in @INC, adding to @INC
Cached Registry Unavailable...
Running Complete Clean...
DBD::Pg::st execute failed: ERROR: relation
"pycnoporus_mart.meta_registry" does not exist at
/opt/biomart-perl/bin/../lib/BioMart/Configuration/RegistryDBPointer.pm
line 88.
ERROR something wrong with your registry: DBD::Pg::st execute failed:
ERROR: relation "pycnoporus_mart.meta_registry" does not exist at
/opt/biomart-perl/bin/../lib/BioMart/Configuration/RegistryDBPointer.pm
line 88.
