Please replace the MartURLLocation section with the following: <MartDBLocation databaseType="mysql" host="martdb.ensembl.org<http://martdb.ensembl.org>" database="snp_mart_59" name="snp" displayName="ENSEMBL VARIATION 59 (SANGER UK)" port="5316" schema="snp_mart_59" user="anonymous" password="" visible="1" default="0" martUser="" includeDatasets="" />
Jonathan Guberman, PhD Application Programmer Ontario Institute for Cancer Research MaRS Centre, South Tower 101 College Street, Suite 800 Toronto, Ontario, Canada M5G 0A3 Tel: 647-260-7818 Toll-free: 1-866-678-6427 www.oicr.on.ca<http://www.oicr.on.ca> On 2010-10-25, at 2:48 PM, <vile...@vt.edu<mailto:vile...@vt.edu>> <vile...@vt.edu<mailto:vile...@vt.edu>> wrote: Hi all, I was wondering as I still haven't found a solid solution to this problem yet, if I was able to download/query Biomart correctly with this Registry: <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE MartRegistry> <MartRegistry> <MartURLLocation name = "ensembl" displayName = "ensembl" host = "www.biomart.org<http://www.biomart.org>" port = "80" visible = "1" default = "" includeDatasets = "btaurus_gene_ensembl" martUser = "" /> </MartRegistry> What exactly do I need to change in my registry in order to download from the SNP database? I tried different name/displayName/includeDatasets (like btaurus_snp) but to no avail, please help, thank you. Dzu
