Aaron,
I can’t seem to get the latest version of Mauve to run on my windows
laptop. The program exits with the same error code when writing the guide
tree. Any input would be appreciated. Thanks.
Running alignment.
Executing
win64\progressiveMauve
--output=K12_TolC_Alignment
--output-guide-tree=K12_TolC_Alignment.guide_tree
--backbone-output=K12_TolC_Alignment.backbone
C:\Users\xz3768\Desktop\K12_DH10Bgenome.fa
C:\Users\xz3768\Desktop\K12_TOLC_contigs.fas
C:\Users\xz3768\Desktop\K12_TOLC_parent_contigs.fas
Storing raw sequence at C:\Users\xz3768\AppData\Local\Temp\raw1401.tmp
Sequence loaded successfully.
C:\Users\xz3768\Desktop\K12_DH10Bgenome.fa 4686137 base pairs.
Storing raw sequence at C:\Users\xz3768\AppData\Local\Temp\raw1662.tmp
Sequence loaded successfully.
C:\Users\xz3768\Desktop\K12_TOLC_contigs.fas 4715635 base pairs.
Storing raw sequence at C:\Users\xz3768\AppData\Local\Temp\raw1808.tmp
Sequence loaded successfully.
C:\Users\xz3768\Desktop\K12_TOLC_parent_contigs.fas 4710259 base pairs.
Using weight 15 mers for initial seeds
Creating sorted mer list
Create time was: 2 seconds.
Creating sorted mer list
Create time was: 2 seconds.
Creating sorted mer list
Create time was: 2 seconds.
0%..1%..2%..3%..4%..5%..6%..7%..8%..9%..10%..
11%..12%..13%..14%..15%..16%..17%..18%..19%..20%..
21%..22%..23%..24%..25%..26%..27%..28%..29%..30%..
31%..32%..33%..34%..35%..36%..37%..38%..39%..40%..
41%..42%..43%..44%..45%..46%..47%..48%..49%..50%..
51%..52%..53%..54%..55%..56%..57%..58%..59%..60%..
61%..62%..63%..64%..65%..66%..67%..68%..69%..70%..
71%..72%..73%..74%..75%..76%..77%..78%..79%..80%..
81%..82%..83%..84%..85%..86%..87%..88%..89%..90%..
91%..92%..93%..94%..95%..96%..97%..98%..99%..done.
using default bp penalty: 155158
using default bp estimate min score: 465475
Starting with 1047 multi-matches
Computing genome content distance matrix...
Genome conservation distance matrix:
0 0.0771738 0.0795964
0.0771738 0 0.0060033
0.0795964 0.0060033 0
Writing guide tree to K12_TolC_Alignment.guide_tree
Exited with error code: -1073741819
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