Hello, I'm using Mauve to map assembled contigs of s.pombe back to the reference. I'm interested in studying regions that did not map back to the genome as they could be insertions in the genome of the assembled strain or deletions in the reference.
The "Export Gaps" option only gives me the coordinates of the gaps in the contigs that had alignments. If I click on the alignment summary it tells me that there are 334 extra contigs. Is there a way to extract these contigs that did not map, or at least get their names? I would appreciate your help. Thanks, Ahmad
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