Hi Susan, I am guessing you refer to the xmfa2fasta.pl script posted to this list by Lu Cheng some years ago? If so, it is still available via the attachments link on this mailing list archive page: http://sourceforge.net/p/mauve/mailman/mauve-users/thread/51f26b88.2000...@helsinki.fi/
a little googling also turns up a newer script of the same name, but different implementation: https://github.com/kjolley/seq_scripts/blob/master/xmfa2fasta.pl Best, -Aaron On Mon, 2015-12-21 at 20:39 +0000, Susan Beth Fogelson wrote: > Hi, > > > > I am trying to extract my LCBs from an alignment of 33 bacterial > genomes to construct a core alignment. I am looking for a working > link to the xmfa2fasta.pl. Does anyone have this file that they can > share? Thanks > > > > -Susan > > > > Susan Fogelson, DVM, MS, Dipl. ACVP > > Aquatic Animal Anatomic Pathologist and PhD candidate > > foge...@uga.edu > > 706-542-5859 > > > > > > ------------------------------------------------------------------------------ > _______________________________________________ > Mauve-users mailing list > Mauve-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mauve-users -- Aaron E. Darling, Ph.D. Associate Professor, ithree institute University of Technology Sydney Australia http://darlinglab.org twitter: @koadman UTS CRICOS Provider Code: 00099F DISCLAIMER: This email message and any accompanying attachments may contain confidential information. If you are not the intended recipient, do not read, use, disseminate, distribute or copy this message or attachments. If you have received this message in error, please notify the sender immediately and delete this message. Any views expressed in this message are those of the individual sender, except where the sender expressly, and with authority, states them to be the views of the University of Technology Sydney. Before opening any attachments, please check them for viruses and defects. Think. Green. Do. Please consider the environment before printing this email.
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