Thanks for the suggestion, but I gave that a try but am still getting the 
same error. Any other ideas?

Lawrence

On Tuesday, April 11, 2017 at 4:15:51 PM UTC-4, Mike Collyer wrote:
>
> Lawrence,
>
> I recommend first making a geomorph data frame and using it in your 
> analyses.  If the error persists, let us know.  These types of errors are 
> often caused by R trying to figure out how to use objects in the global 
> environment, rather that getting the data specifically from a list.
>
> Hope that helps!
> Mike
>
>
> On Apr 11, 2017, at 4:11 PM, Lawrence Fatica <lawrence...@gmail.com 
> <javascript:>> wrote:
>
> Hi all,
> I am trying to use the trajectory.analysis function in geomorph and have 
> come across an error I'm not sure how to fix. The command I am using is as 
> follows:
>
> trajectory.analysis(proc.coords ~ classifier$age + classifier$species + 
> classifier$age:classifier$species)
>
> in which "proc.coords" is the output from gpagen, and "classifier" is a 
> data frame with factors denoting age classes and species.
>
> The error I get is as follows:
>
> Error in procD.fit(f1, data = data, pca = FALSE) : 
>   Different numbers of specimens in dependent and independent variables
>
> I've double checked that I have Procrustes coordinates for 90 specimens, 
> age categories for 90 specimens, and species designations for 90 specimens. 
> I've gotten this to work in an earlier version of geomorph. Am I 
> overlooking something here?
>
> Many thanks,
> Lawrence
>
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