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Hi folks,
We are looking for people interested in testing our development version of =
SlicerMorph toolkit. As it stands, tools provided in SlicerMorph extension =
lets you:
* browse and download 3D specimens from specimen repositories like Morp=
hoSource.
* Utilize the existing functionality of the 3D Slicer to digitize landm=
arks from specimens, as well as taking 3D measurements of linear distances,=
areas and volumes (last two would require segmentation).
* We provide a generalized Procrustes analysis to conduct Procrustes su=
perimposition of the landmarks, as well as visualization tools to study lan=
dmark variability, and the deformations associated with one (or more) PCs a=
s vectors or as in full 3D (a reference sample is required). Plotting of Pr=
ocrustes distances and PCs is also provided through the existing modules of=
Slicer.
* Provides utility functions (e.g., convert IDAV landmark editor files =
to Slicer landmark, import reconstruction from Bruker/Skyscan microCTs as 3=
D volumes)
We are going to do an online demo of both 3D Slicer and SlicerMorph toolkit=
on March 6th from 10-12pm (Pacific Standard Time) using webex. The first h=
our is going to be general Slicer functionality (Setting up Slicer, loading=
3D volumes/models, 3D rendering, segmentation and 3D model creation, landm=
arking and measurements), and the second half will be specific to the Slice=
rMorph functionality. While you don't have to attend the demo to test our t=
oolkit, I think you will find it useful because we do piggy-back on existin=
g Slicer modules to accomplish specific tasks (e.g., plotting, control of 3=
D renderings etc).
There is an online signup form
https://forms.office.com/Pages/ResponsePage.aspx?id=3DW9229i_wGkSZoBYqxQYL0=
lnYz8n5LvRInWGoz5_LAC1UNlQxQ0pFVEJKRjVaS1cwS0JXMDFKTTY0NC4u
please provide your name and email, so that we can send you the Webex sessi=
on info and how to get the SlicerMorph and 3D Slicer package. The only requ=
est we have from attendees is to test the software on their own (we provide=
sample data) after the demo and give us feedback and report issues through=
an online survey. Depending on the interest and feedback, we might repeat =
these online sessions in future.
Note that if you are entirely new to landmark-based statistical shape analy=
sis and 3D morphology, this demo session might not be ideal for you, as it =
will cover a lot of ground in two hours. We are in process of finalizing th=
e contents of our intense summer workshop at UW Friday Harbor Lab (schedule=
d for Aug 25th to Sept 1st) which will be better suited for people starting=
with 3D morphometrics. An announcement will be made for course registratio=
n and logistics in the next few weeks.
Feel free to pass this message people outside of morphmet.
A. Murat Maga, PhD
Asst. Professor
Division of Craniofacial Medicine
UW Dept. of Pediatrics
&
Member
Center for Developmental Biology and Regenerative Medicine
Seattle Children's Research Institute
https://SlicerMorph.github.io
Follow @SlicerMorph<https://twitter.com/SlicerMorph>
--=20
MORPHMET may be accessed via its webpage at http://www.morphometrics.org
---=20
You received this message because you are subscribed to the Google Groups "=
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To unsubscribe from this group and stop receiving emails from it, send an e=
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<p class=3D"MsoNormal">Hi folks,<o:p></o:p></p>
<p class=3D"MsoNormal"><o:p> </o:p></p>
<p class=3D"MsoNormal">We are looking for people interested in testing our =
development version of SlicerMorph toolkit. As it stands, tools provided in=
SlicerMorph extension lets you:<o:p></o:p></p>
<ul style=3D"margin-top:0in" type=3D"disc">
<li class=3D"MsoListParagraph" style=3D"margin-left:0in;mso-list:l0 level1 =
lfo1">browse and download 3D specimens from specimen repositories like Morp=
hoSource.<o:p></o:p></li><li class=3D"MsoListParagraph" style=3D"margin-lef=
t:0in;mso-list:l0 level1 lfo1">Utilize the existing functionality of the 3D=
Slicer to digitize landmarks from specimens, as well as taking 3D measurem=
ents of linear distances, areas and volumes (last two would require
segmentation). <o:p></o:p></li><li class=3D"MsoListParagraph" style=3D"mar=
gin-left:0in;mso-list:l0 level1 lfo1">We provide a generalized Procrustes a=
nalysis to conduct Procrustes superimposition of the landmarks, as well as =
visualization tools to study landmark variability, and the deformations
associated with one (or more) PCs as vectors or as in full 3D (a reference=
sample is required). Plotting of Procrustes distances and PCs is also prov=
ided through the existing modules of Slicer.
<o:p></o:p></li><li class=3D"MsoListParagraph" style=3D"margin-left:0in;mso=
-list:l0 level1 lfo1">Provides utility functions (e.g., convert IDAV landma=
rk editor files to Slicer landmark, import reconstruction from Bruker/Skysc=
an microCTs as 3D volumes)
<o:p></o:p></li></ul>
<p class=3D"MsoNormal"><o:p> </o:p></p>
<p class=3D"MsoNormal">We are going to do an online demo of both 3D Slicer =
and SlicerMorph toolkit on
<b>March 6<sup>th</sup> from 10-12pm</b> (Pacific Standard Time) using webe=
x. The first hour is going to be general Slicer functionality (Setting up S=
licer, loading 3D volumes/models, 3D rendering, segmentation and 3D model c=
reation, landmarking and measurements),
and the second half will be specific to the SlicerMorph functionality. Whi=
le you don’t have to attend the demo to test our toolkit, I think you=
will find it useful because we do piggy-back on existing Slicer modules to=
accomplish specific tasks (e.g., plotting,
control of 3D renderings etc). <o:p></o:p></p>
<p class=3D"MsoNormal"><o:p> </o:p></p>
<p class=3D"MsoNormal">There is an online signup form <o:p></o:p></p>
<p class=3D"MsoNormal"><a href=3D"https://forms.office.com/Pages/ResponsePa=
ge.aspx?id=3DW9229i_wGkSZoBYqxQYL0lnYz8n5LvRInWGoz5_LAC1UNlQxQ0pFVEJKRjVaS1=
cwS0JXMDFKTTY0NC4u">https://forms.office.com/Pages/ResponsePage.aspx?id=3DW=
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NC4u</a><o:p></o:p></p>
<p class=3D"MsoNormal"><o:p> </o:p></p>
<p class=3D"MsoNormal">please provide your name and email, so that we can s=
end you the Webex session info and how to get the SlicerMorph and 3D Slicer=
package. The only request we have from attendees is to test the software o=
n their own (we provide sample data)
after the demo and give us feedback and report issues through an online su=
rvey. Depending on the interest and feedback, we might repeat these online =
sessions in future.
<o:p></o:p></p>
<p class=3D"MsoNormal"><o:p> </o:p></p>
<p class=3D"MsoNormal">Note that if you are entirely new to landmark-based =
statistical shape analysis and 3D morphology, this demo session might not b=
e ideal for you, as it will cover a lot of ground in two hours. We are in p=
rocess of finalizing the contents
of our intense summer workshop at UW Friday Harbor Lab (scheduled for Aug =
25<sup>th</sup> to Sept 1<sup>st</sup>) which will be better suited for peo=
ple starting with 3D morphometrics. An announcement will be made for course=
registration and logistics in the
next few weeks. <o:p></o:p></p>
<p class=3D"MsoNormal"><o:p> </o:p></p>
<p class=3D"MsoNormal">Feel free to pass this message people outside of mor=
phmet.<o:p></o:p></p>
<p class=3D"MsoNormal"><o:p> </o:p></p>
<p class=3D"MsoNormal"><o:p> </o:p></p>
<p class=3D"MsoNormal">A. Murat Maga, PhD<o:p></o:p></p>
<p class=3D"MsoNormal">Asst. Professor<o:p></o:p></p>
<p class=3D"MsoNormal">Division of Craniofacial Medicine<o:p></o:p></p>
<p class=3D"MsoNormal">UW Dept. of Pediatrics<o:p></o:p></p>
<p class=3D"MsoNormal">&<o:p></o:p></p>
<p class=3D"MsoNormal">Member<o:p></o:p></p>
<p class=3D"MsoNormal">Center for Developmental Biology and Regenerative Me=
dicine<o:p></o:p></p>
<p class=3D"MsoNormal">Seattle Children's Research Institute<o:p></o:p></p>
<p class=3D"MsoNormal"><a href=3D"https://SlicerMorph.github.io";><span styl=
e=3D"color:#0563C1">https://SlicerMorph.github.io</span></a><o:p></o:p></p>
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