Having enjoyed viewing the "Western" Flycatcher in Central Park today, I
thought it might be useful to  read the most relevant information on the
question of whether or not the "Pacific-slope" and "Cordilleran"
Flycatchers are distinct species. Some birders who have seen (or,
hopefully, will soon see) this bird may be interested.

First, regarding identification, the account by Lowther in Birds of North
America notes that "the commonly heard call, especially from migrant or
overwintering birds, is a sharp seet! that is NOT DIAGNOSTIC for either
species." [Emphasis added.]  And, "identification by call of migrants and
vagrants outside the known breeding range is problematic."  Lowther
discusses discrimination by measurements of flight feathers at some length,
and notes that there is much overlap: only about 60% of individuals of
KNOWN identity (by breeding location) can be discriminated.

The split of Western Flycatcher (Empidonax difficilis) into two species was
recognized by the AOU in 1989, on the basis of a paper by Johnson and
Marten in 1988. Since then there has been controversy about their
"species'" status, based on phenotypically intermediate birds, especially
in interior southern Canada (British Columbia and Alberta), where the
ranges of the two forms come into contact. Johnson and Marten reported data
from a contact zone in California, but not the Canadian zone.

In 2002, Johnson and Cicero reported that the two forms had different
mitochondrial DNA (mtDNA) sequences. I should note that mtDNA is probably
the DNA data one should LEAST rely on for discriminating species, because
it is not at all representative of most of the genome, for several reasons.

The only subsequent DNA-based study -- and it is a good one-- is by A.C.
Rush et al. 2009, Analysis of multilocus DNA reveals hybridization in a
contact zone between Empidonax flycatchers, Journal of Avian Biology
40:612-624.  They analyzed both mtDNA and chromosomal DNA for 48 specimens,
including birds from 8 sites in the Canadian contact zone, plus "pure"
Pacific-slope and Cordilleran populations from California and the Rocky
Mountains in the U.S.  The chromosomal DNA was not gene sequences, but a
much cruder kind of data (AFLP), based on a method that reveals single
small changes within any of a number of very short DNA sequences scattered
throughout the chromosomes.

Their first important finding is that none of the chromosomal DNA markers
completely separates Pacific-Slope from Cordilleran Flycatchers, even those
distant from the contact zone. The "species" differ only in the percentages
of different versions of each marker (like different proportions of people
with different eye colors). Second, they found that birds from the contact
zone have the same mtDNA as Pacific-slope Flycatchers. However, the
chromosomal DNA markers showed a broad band of hybridization: over a span
of 400 kilometers, birds show evidence of mixed ancestry.

Their data conform to a scenario in which an ancestral flycatcher was
divided into two populations, presumably in the Pacific and Rocky Mountain
regions, for a long time. They became somewhat genetically different,
mostly by a  process of random genetic change known as genetic drift, in
which most of the genetic changes have absolutely no effect on the
characteristics of the birds (plumage, voice, behavior, ecology). Any two
separated populations will undergo this process of random genetic
divergence -- all it needs is time. In this scenario, the two populations
expanded their ranges northward and came into contact recently, perhaps
less than 10,000 years ago, after the most recent glaciation receded. They
have been freely interbreeding in southern Canada, and the Pacific-slope
mtDNA (the authors suggest) has been spreading into the contact zone faster
than the chromosomal DNA because the density of Pacific-slope Flycatcher
populations is higher (so they flood the zone) and because they arrive
earlier in the spring, so they may get more mates and father more hybrid
offspring.

The bottom line:  there is extensive hybridization and gene flow between
these forms. The authors comment about the AOU decision to split: "We now
wonder whether, given the present evidence, the decision to formally
split..would have been made."  If it were up to me to hand down AOU
decisions, these forms would be retired, and we would go back to a single
species, Western Flycatcher.  I hope the AOU ultimately comes around to
that view.

Doug Futuyma
Stony Brok, NY

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