Hello community, here is the log from the commit of package hdf5 for openSUSE:Factory checked in at 2012-03-09 21:23:35 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Comparing /work/SRC/openSUSE:Factory/hdf5 (Old) and /work/SRC/openSUSE:Factory/.hdf5.new (New) ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "hdf5", Maintainer is "[email protected]" Changes: -------- New Changes file: --- /dev/null 2012-03-04 14:46:25.491534019 +0100 +++ /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes 2012-03-09 21:23:36.000000000 +0100 @@ -0,0 +1,250 @@ +------------------------------------------------------------------- +Sun Feb 19 04:46:42 UTC 2012 - [email protected] + +- Removed "Fixup headers and scripts for multiarch". + +------------------------------------------------------------------- +Wed Nov 30 09:02:37 UTC 2011 - [email protected] + +- Remove redundant/unwanted tags/section (cf. specfile guidelines) +- Use %_smp_mflags for parallel building +- Accurate rpmgroup selection for shared library packages + +------------------------------------------------------------------- +Tue Nov 29 20:05:19 UTC 2011 - [email protected] + +- un-commented --with-pthread and --with-ssl. + +------------------------------------------------------------------- +Mon Nov 28 14:34:24 UTC 2011 - [email protected] + +- Update to 1.8.8 + * Add patch to avoid setting LD_LIBRARY_PATH + * Add patch hdf5-non_void_return.patch + * Fixed non_void_return (thanks to Boris Manojlovic). + * Drop tstlite patch + * drop ppc64 longdouble patch, not required anymore + * Catch up with some Fedora modifications + - Add rpm macro %%{_hdf5_version} for convenience + * No Fortran modules for opensuse < 11.4 (Do not pass make check) + + New Features + ============ + + Configuration + ------------- + - Added the --enable-fortran2003 flag to enable Fortran2003 support + in the HDF5 Fortran library. The flag should be used along with the + --enable-fortran flag and takes affect only when the Fortran compiler + is Fortran2003 compliant. (EIP - 2011/11/14) + - Added checks for clock_gettime and mach/mach_time.h to both configure and + CMake. This will support the move from gettimeofday to clock_gettime's + monotonic timer in the profiling code in a future release. + (DER - 2011/10/12) + + Library + ------- + - The Windows VFD code has been removed with the exception of the functions + which set it (H5Pset_fapl_windows, for example). Setting the Windows + VFD now really sets the SEC2 VFD. The WINDOWS_MAX_BUF and + WINDOWS_USE_STDIO configuration options and #defines have also been + removed. NOTE: Since the Windows VFD was a clone of the SEC2 VFD, this + change should be transparent to users. + (DER - 2011/10/12 - HDFFV-7740, HDFFV-7744) + - H5Tcreate now supports the string type (fixed-length and variable- + length). (SLU - 2011/05/20) + + Parallel Library + ---------------- + - Added new H5Pget_mpio_actual_chunk_opt_mode and + H5Pget_mpio_actual_io_mode API routines for querying whether/how + a collective I/O operation completed. (QAK - 2011/10/12) + + Tools + ----- + - None + + High-Level APIs + --------------- + - Added the following Fortran wrappers for the Dimension Scale APIs: + h5dsset_scale_f + h5dsattach_scale_f + h5dsdetach_scale_f + h5dsis_attached_f + h5dsis_scale_f + h5dsset_label_f + h5dsget_label_f + h5dsget_scale_name_f + h5dsget_num_scales_f + (EIP for SB - 2011/10/13 - HDFFV-3797) + + Fortran API + ----------- + - The HDF5 Fortran library was enhanced to support the Fortran 2003 standard. + The following features are available when the HDF5 library is configured + using the --enable-fortran and --enable-fortran2003 configure flags AND + if the Fortran compiler is Fortran 2003 compliant: + + - Subroutines overloaded with the C_PTR derived type: + h5pget_f + h5pget_fill_value_f + h5pinsert_f + h5pregister_f + h5pset_f + h5pset_fill_value_f + h5rcreate_f + h5rderefrence_f + h5rget_name_f + h5rget_obj_type_f + - Subroutines overloaded with the C_PTR derived type + and simplified signatures: + h5aread_f + h5awrite_f + h5dread_f + h5dwrite_f + - New subroutines + h5dvlen_reclaim_f + h5literate_by_name_f + h5literate_f + h5ovisit_f + h5tconvert_f + h5pset_nbit_f + h5pset_scaleoffset_f + - Subroutines with additional optional parameters: + h5pcreate_class_f + (EIP - 2011/10/14) + + C++ API + ------- + - None + +------------------------------------------------------------------- +Thu Jun 2 20:39:35 UTC 2011 - [email protected] + +- uncomment make check + +------------------------------------------------------------------- +Tue May 24 14:37:23 UTC 2011 - [email protected] + +- updated to 1.8.7 + +------------------------------------------------------------------- +Fri Apr 29 16:11:29 CEST 2011 - [email protected] + +- undrop package. +- Do type-punning using unions to be able to compile without + -fno-strict-aliasing. +- Don't use macros in patch names. +- Use _cv_ in variables to be cached by configure. + +------------------------------------------------------------------- +Thu May 7 19:40:59 CEST 2009 - [email protected] + +- fixed build with new gcc, see [bnc#501751] + +------------------------------------------------------------------- +Mon Mar 2 17:00:47 CET 2009 - [email protected] + +- save 9MB removing static libraries + +------------------------------------------------------------------- +Tue Jan 13 11:41:28 CET 2009 - [email protected] + +- updated to 1.8.2: + - Upgraded libtool to version 2.2.6a. (MAM - 2008/10/15). + - Added two new public routines: H5Pget_elink_fapl() and + H5Pset_elink_fapl(). (see bug #1247) (VC - 2008/10/13) + - Improved free space tracking in file to be faster. (QAK - 2008/10/06) + - Added 'mounted' field to H5G_info_t struct. (QAK - 2008/07/15) + - h5repack: added new options -u and -b to add a userblock to an HDF5 + file during the repack. (PVN - 2008/08/26) + - h5repack: added options -t and -a to call H5Pset_alignment while + creating a repacked file. (PVN - 2008/08/29) + - h5ls: added capability to traverse through external links when the -r + (recursive) flag is given. (NAF - 2008/09/16) + - h5ls: added -E option to enable traversal of external links. + h5ls will not traverse external links without this flag being set. + (NAF - 2008/10/06) + - h5dump: when -b flag is used without a keyword after it, binary + output defaults to NATIVE. MEMORY keyword was deprecated + and replaced by NATIVE keyword. (PVN - 2008/10/30) + - h5diff: returns 1 when file graphs differ by any object. + Error return code was changed to 2 from -1. (PVN - 2008/10/30) + - h5import: TEXTFPE (scientific format) was deprecated. Use TEXTFP + instead (PVN - 2008/10/30) + - Added optional parameter 'mounted' to H5Gget_info_f, + H5Gget_info_by_idx_f, H5Gget_info_by_name_f (MSB - 2008/09/24) + - Added H5Tget_native_type_f (MSB - 2008/09/30) + - These member functions were added as wrapper for H5Rdereference to + replace the incorrect IdComponent::dereference(). + void H5Object::dereference(H5Object& obj, void* ref, + H5R_type_t ref_type=H5R_OBJECT) + void H5Object::dereference(H5File& h5file, void* ref, + H5R_type_t ref_type=H5R_OBJECT) + void H5Object::dereference(Attribute& obj, void* ref, + H5R_type_t ref_type=H5R_OBJECT) + In addition, these constructors were added to create the associated + objects by way of dereference: + DataSet(H5Object& obj, void* ref, H5R_type_t ref_type=H5R_OBJECT) + DataSet(H5File& file, void* ref, H5R_type_t ref_type=H5R_OBJECT) + DataSet(Attribute& attr, void* ref, H5R_type_t ref_type=H5R_OBJECT) + Group(H5Object& obj, void* ref, H5R_type_t ref_type=H5R_OBJECT) + Group(H5File& obj, void* ref, H5R_type_t ref_type=H5R_OBJECT) + Group(Attribute& attr, void* ref, H5R_type_t ref_type=H5R_OBJECT) + DataType(H5Object& obj, void* ref, H5R_type_t ref_type=H5R_OBJECT) + DataType(H5File& file, void* ref, H5R_type_t ref_type=H5R_OBJECT) + DataType(Attribute& attr, void* ref, H5R_type_t ref_type=H5R_OBJECT) + (BMR - 2008/10/29) ++++ 53 more lines (skipped) ++++ between /dev/null ++++ and /work/SRC/openSUSE:Factory/.hdf5.new/hdf5.changes New: ---- h5comp hdf5-1.8.8.tar.bz2 hdf5-LD_LIBRARY_PATH.patch hdf5-non_void_return.patch hdf5.changes hdf5.spec ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Other differences: ------------------ ++++++ hdf5.spec ++++++ # # spec file for package hdf5 (Version 1.8.8) # # Copyright (c) 2009-2011 SUSE LINUX Products GmbH, Nuernberg, Germany. # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # Please submit bugfixes or comments via http://bugs.opensuse.org/ # %define hdf5_libver 0 %define libname libhdf5 Name: hdf5 Version: 1.8.8 Release: 0 Summary: A general purpose library and file format for storing scientific data License: BSD-3-Clause Group: Development/Libraries/Other URL: http://www.hdfgroup.org/HDF5/ Source0: http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-%{version}%{?snaprel}.tar.bz2 Source1: h5comp Patch0: hdf5-LD_LIBRARY_PATH.patch Patch1: hdf5-non_void_return.patch BuildRoot: %{_tmppath}/%{name}-%{version}-build BuildRequires: krb5-devel, openssl-devel, zlib-devel, gcc-fortran, gcc-c++ BuildRequires: fdupes %description HDF5 is a general purpose library and file format for storing scientific data. HDF5 can store two primary objects: datasets and groups. A dataset is essentially a multidimensional array of data elements, and a group is a structure for organizing objects in an HDF5 file. Using these two basic objects, one can create and store almost any kind of scientific data structure, such as images, arrays of vectors, and structured and unstructured grids. You can also mix and match them in HDF5 files according to your needs. %package -n %{libname}-%{hdf5_libver} Summary: HDF 5 runtime libraries Group: System/Libraries %description -n %{libname}-%{hdf5_libver} The HDF project involves the development and support of software and file formats for scientific data management. The HDF software includes I/O libraries and tools for analyzing, visualizing, and converting scientific data. This package contains the HDF 5 runtime libraries. %package -n %{libname}_hl%{hdf5_libver} Summary: HDF 5 runtimelibraries Group: System/Libraries %description -n %{libname}_hl%{hdf5_libver} The HDF project involves the development and support of software and file formats for scientific data management. The HDF software includes I/O libraries and tools for analyzing, visualizing, and converting scientific data. This package contains the HDF 5 runtime libraries. %package devel Summary: Hierarchical Data File Format Version 5 Group: Development/Libraries/Parallel Requires: %{name} = %{version} # Required by Fortran programs? Requires: %{libname}-%{hdf5_libver} = %{version} Requires: %{libname}_hl%{hdf5_libver} = %{version} %description devel The HDF project involves the development and support of software and file formats for scientific data management. The HDF software includes I/O libraries and tools for analyzing, visualizing, and converting scientific data. This package contains all files needed to create projects that use hdf5. %package devel-static Summary: Hierarchical Data File Format Version 5 - static libraries Group: Development/Libraries/C and C++ Requires: hdf5-devel %description devel-static The HDF project involves the development and support of software and file formats for scientific data management. The HDF software includes I/O libraries and tools for analyzing, visualizing, and converting scientific data. This package provides the static libraries. %package examples Summary: Examples for HDF5 Group: Development/Libraries/Parallel Requires: %{libname}-%{hdf5_libver} = %{version} Requires: %{libname}_hl%{hdf5_libver} = %{version} %description examples Examples of HDF5 library use. %prep %setup -q %patch0 -p1 -b .LD_LIBRARY_PATH %patch1 -b .non_void_return #This should be fixed in 1.8.7 find \( -name '*.[ch]*' -o -name '*.f90' -o -name '*.txt' \) -exec chmod -x {} + %build export CC=gcc export CXX=g++ export F9X=gfortran export CFLAGS="${RPM_OPT_FLAGS/O2/O0}" # export CFLAGS="%%{optflags} -fno-strict-aliasing" %configure \ --disable-dependency-tracking \ %if 0%{?suse_version} > 1140 --enable-fortran \ %endif --enable-hl \ --enable-shared \ --enable-cxx \ --with-pthread \ --with-ssl \ # --with-pic make %{?_smp_mflags} %install %makeinstall docdir=%{buildroot}%{_docdir} rm -rf %{buildroot}/%{_libdir}/*.la %{buildroot}/%{_libdir}/*.settings find %{buildroot}%{_datadir}/hdf5_examples -type f \ | grep -v ".sh$" | xargs chmod 644 %fdupes -s %{buildroot}/%{_datadir} %if 0%{?suse_version} > 1140 binaries="h5c++ h5cc h5fc" %else binaries="h5c++ h5cc" %endif # rpm macro for version checking mkdir -p %{buildroot}%{_sysconfdir}/rpm cat > %{buildroot}%{_sysconfdir}/rpm/macros.hdf5 <<EOF # # RPM macros for R packaging # # # Make R search index.txt # %_hdf5_version %{version} EOF %check make check %post -n %{libname}-%{hdf5_libver} -p /sbin/ldconfig %postun -n %{libname}-%{hdf5_libver} -p /sbin/ldconfig %post -n %{libname}_hl%{hdf5_libver} -p /sbin/ldconfig %postun -n %{libname}_hl%{hdf5_libver} -p /sbin/ldconfig %files %defattr(-,root,root) %doc COPYING MANIFEST README.txt release_docs/RELEASE.txt %doc release_docs/HISTORY-1_0-1_8_0_rc3.txt release_docs/HISTORY-1_8.txt %doc release_docs/RELEASE.txt %{_bindir}/* %files -n %{libname}-%{hdf5_libver} %defattr(0755,root,root) %{_libdir}/libhdf5.so.* %{_libdir}/libhdf5_cpp.so.* %if 0%{?suse_version} > 1140 %{_libdir}/libhdf5_fortran.so.* %endif %files -n libhdf5_hl%{hdf5_libver} %defattr(0755,root,root) %{_libdir}/libhdf5_hl.so.* %{_libdir}/libhdf5_hl_cpp.so.* %if 0%{?suse_version} > 1140 %{_libdir}/libhdf5hl_fortran.so.* %endif %files devel %defattr(-,root,root) %config(noreplace) %{_sysconfdir}/rpm/macros.hdf5 %{_includedir}/*.h %{_libdir}/*.so %if 0%{?suse_version} > 1140 %{_includedir}/*.mod %endif %files devel-static %defattr(-,root,root) %{_libdir}/*.a %files examples %defattr(-,root,root) %{_datadir}/hdf5_examples %changelog ++++++ h5comp ++++++ #!/bin/bash ARCH=$(uname -m) case $ARCH in x86_64 | ppc64 | ia64 | s390 ) BITS=64;; * ) BITS=32;; esac exec $0-${BITS} "$@" ++++++ hdf5-LD_LIBRARY_PATH.patch ++++++ diff -up hdf5-1.8.8/configure.LD_LIBRARY_PATH hdf5-1.8.8/configure --- hdf5-1.8.8/configure.LD_LIBRARY_PATH 2011-11-16 11:21:54.511269486 -0700 +++ hdf5-1.8.8/configure 2011-11-16 11:28:18.673392600 -0700 @@ -26746,8 +26746,6 @@ $as_echo_n "checking how to print long l if ${hdf5_cv_printf_ll+:} false; then : $as_echo_n "(cached) " >&6 else - LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo $AM_LDFLAGS $LDFLAGS | sed -e 's/-L/:/g' -e 's/ //g'`" -export LD_LIBRARY_PATH for hdf5_cv_printf_ll in l ll L q unknown; do if test "$cross_compiling" = yes; then : diff -up hdf5-1.8.8/src/Makefile.in.LD_LIBRARY_PATH hdf5-1.8.8/src/Makefile.in --- hdf5-1.8.8/src/Makefile.in.LD_LIBRARY_PATH 2011-11-15 08:13:54.000000000 -0700 +++ hdf5-1.8.8/src/Makefile.in 2011-11-16 11:43:42.938914069 -0700 @@ -1267,8 +1267,6 @@ help: # Remove the generated .c file if errors occur unless HDF5_Make_Ignore # is set to ignore the error. H5Tinit.c: H5detect$(EXEEXT) - LD_LIBRARY_PATH="$$LD_LIBRARY_PATH`echo $(LDFLAGS) | \ - sed -e 's/-L/:/g' -e 's/ //g'`" \ $(RUNSERIAL) ./H5detect$(EXEEXT) > $@ || \ (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ ($(RM) $@ ; exit 1) @@ -1279,8 +1277,6 @@ H5Tinit.c: H5detect$(EXEEXT) # Remove the generated .c file if errors occur unless HDF5_Make_Ignore # is set to ignore the error. H5lib_settings.c: H5make_libsettings$(EXEEXT) libhdf5.settings - LD_LIBRARY_PATH="$$LD_LIBRARY_PATH`echo $(LDFLAGS) | \ - sed -e 's/-L/:/g' -e 's/ //g'`" \ $(RUNSERIAL) ./H5make_libsettings$(EXEEXT) > $@ || \ (test $$HDF5_Make_Ignore && echo "*** Error ignored") || \ ($(RM) $@ ; exit 1) ++++++ hdf5-non_void_return.patch ++++++ Index: hl/src/H5LTanalyze.l =================================================================== --- hl/src/H5LTanalyze.l.orig 2011-11-27 14:19:17.000000000 +0100 +++ hl/src/H5LTanalyze.l 2011-11-27 14:20:12.619164660 +0100 @@ -184,6 +184,7 @@ int my_yyinput(char *buf, int max_size) int H5LTyyerror(char *msg) { printf("ERROR: %s before \"%s\".\n", msg, yytext); + return (0); // return from non void fix } int yywrap() Index: test/dt_arith.c =================================================================== --- test/dt_arith.c.orig 2011-11-27 14:22:13.000000000 +0100 +++ test/dt_arith.c 2011-11-27 14:22:21.908435252 +0100 @@ -3470,6 +3470,7 @@ error: else if(run_test==TEST_DENORM || run_test==TEST_SPECIAL) return 1; #endif + return 1; // return from non void fix } Index: tools/h5diff/h5diff_common.c =================================================================== --- tools/h5diff/h5diff_common.c.orig 2011-11-07 23:11:35.000000000 +0100 +++ tools/h5diff/h5diff_common.c 2011-11-27 14:23:49.105943847 +0100 @@ -69,6 +69,7 @@ static check_options(diff_opt_t* options printf("Try '-h' or '--help' option for more information or see the %s entry in the 'HDF5 Reference Manual'.\n", PROGRAMNAME); h5diff_exit(EXIT_FAILURE); } + return (0); // no return in non void function fix } Index: hl/src/H5LTanalyze.c =================================================================== --- hl/src/H5LTanalyze.c.orig 2011-11-07 23:11:38.000000000 +0100 +++ hl/src/H5LTanalyze.c 2011-11-27 21:59:27.188216404 +0100 @@ -2332,6 +2332,9 @@ int my_yyinput(char *buf, int max_size) int H5LTyyerror(char *msg) { printf("ERROR: %s before \"%s\".\n", msg, yytext); + return (0); // return from non void fix. Fix is already applied at lexer + // file but i will not re-generate this file as it looks it is changed + // by hand ... } int yywrap() -- To unsubscribe, e-mail: [email protected] For additional commands, e-mail: [email protected]
