Hello community, here is the log from the commit of package R-base for openSUSE:Factory checked in at 2014-07-11 06:46:11 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Comparing /work/SRC/openSUSE:Factory/R-base (Old) and /work/SRC/openSUSE:Factory/.R-base.new (New) ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "R-base" Changes: -------- --- /work/SRC/openSUSE:Factory/R-base/R-base.changes 2014-07-02 15:04:42.000000000 +0200 +++ /work/SRC/openSUSE:Factory/.R-base.new/R-base.changes 2014-07-11 06:46:58.000000000 +0200 @@ -1,0 +2,246 @@ +Thu Jul 10 12:35:42 UTC 2014 - [email protected] + +- Added Provides: R-parallel +- Upstream release 3.1.1 +- Most impotant + CHANGES IN R 3.1.1: + +CHANGES IN R 3.1.1: + + NEW FEATURES: + + * When attach() reports conflicts, it does so compatibly with + library() by using message(). + + * R CMD Sweave no longer cleans any files by default, compatibly + with versions of R prior to 3.1.0. There are new options + --clean, --clean=default and --clean=keepOuts. + + * tools::buildVignette() and tools::buildVignettes() with clean = + FALSE no longer remove any created files. buildvignette() gains + a keep argument for more cleaning customization. + + * The Bioconductor 'version' used by setRepositories() can now be + set by environment variable R_BIOC_VERSION at runtime, not just + when R is installed. (It has been stated that Bioconductor will + switch from 'version' 2.14 to 'version' 3.0 during the lifetime + of the R 3.1 series.) + + * Error messages from bugs in embedded Sexpr code in Sweave + documents now report the source location. + + * type.convert(), read.table() and similar read.*() functions get a + new numerals argument, specifying how numeric input is converted + when its conversion to double precision loses accuracy. The + default value, "allow.loss" allows accuracy loss, as in R + versions before 3.1.0. + + * For some compilers, integer addition could overflow without a + warning. R's internal code for both integer addition and + subtraction is more robust now. (PR#15774) + + * The function determining the default number of knots for + smooth.spline() is now exported, as .nknots.smspl(). + + * dbeta(, a,b), pbeta(), qbeta() and rbeta() are now defined also + for a = 0, b = 0, or infinite a and b (where they typically + returned NaN before). + + * Many package authors report that the RStudio graphics device does + not work correctly with their package's use of dev.new(). The + new option dev.new(noRStudioGD = TRUE) replaces the RStudio + override by the default device as selected by R itself, still + respecting environment variables R_INTERACTIVE_DEVICE and + R_DEFAULT_DEVICE. + + * readRDS() now returns visibly. + + * Modifying internal logical scalar constants now results in an + error instead of a warning. + + * install.packages(repos = NULL) now accepts http:// or ftp:// URLs + of package archives as well as file paths, and will download as + required. In most cases repos = NULL can be deduced from the + extension of the URL. + + * The warning when using partial matching with the $ operator on + data frames is now only given when + options("warnPartialMatchDollar") is TRUE. + + * Package help requests like package?foo now try the package foo + whether loaded or not. + + * General help requests now default to trying all loaded packages, + not just those on the search path. + + * Added a new function promptImport(), to generate a help page for + a function that was imported from another package (and presumably + re-exported, or help would not be needed). + + INSTALLATION and INCLUDED SOFTWARE: + + * configure option --with-internal-tzcode can now be used with + variable rsharedir. + + * The included version of PCRE has been updated to 8.35. + + * There is a new target make uninstall-libR to remove an installed + shared/static libR. + + make install-libR now works if a sub-architecture is used, + although the user will need to specify libdir differently for + different sub-architectures. + + * There is more extensive advice on which LaTeX packages are + required to install R or to make package manuals (as done by R + CMD check) in the 'Writing R Extensions' manual. + + * Compilers/linkers were handling the visibility controls in + src/extra/xz inconsistently (and apparently in some cases + incorrectly), so it has been simplified. (PR#15327) + + * (Windows) There is updated support for the use of ICU for + collation: see the 'R Installation and Administration Manual'. + + BUG FIXES: + + * dbinom(x, n), pbinom(), dpois(), etc, are slightly less + restrictive in checking if n is integer-valued. (Wish of + PR#15734.) + + * pchisq(x, df, ncp, log.p = TRUE) is more accurate and no longer + underflows for small x and ncp < 80, e.g, for pchisq(1e-5, df = + 100, ncp = 1, log = TRUE). (Based on PR#15635 and a suggestion + by Roby Joehanes.) + + * The s ("step into") command in the debugger would cause R to step + into expressions evaluated there, not just into functions being + debugged. (PR#15770) + + * The C code used by strptime() rejected time-zone offsets of more + than +1200 (+1245, +1300 and +1400 can occur). (PR#15768) + + * (Windows only.) png(type = "cairo", antialias = "gray") was not + accepted. (PR#15760) + + * Use of save(..., envir=) with named objects could fail. + (PR#15758) + + * Sweave() mis-parsed Sexpr expressions that contained backslashes. + (PR#15779) + + * The return value from options(foo = NULL) was not the previous + value of the option. (PR#15781) + + * enc2utf8() and enc2native() did not always mark the encoding of + the return values when it was known. + + * dnbinom(x, size = <large>, mu, log = TRUE) no longer underflows + to -Inf for large mu, thanks to a suggestion from Alessandro + Mammana (MPI MolGen, Berlin). + + * pbeta(x, a, b, log = TRUE) no longer behaves discontinuously (in + a small x-region) because of denormalized numbers. Also, + pbeta(1-1e-12, 1e30, 1.001, log=TRUE) now terminates "in real + time". + + * The "CRAN" filter (see available.packages()) no longer removes + duplicates other than of packages on CRAN, and does not fail if + there is no CRAN repository in getOption("repos"). + + * The device listing from dev2bitmap() and bitmap() was truncated + to 1000 characters: modern versions of GhostScript on most + platforms have many more devices. + + * (Windows.) Commands such as Sys.which() and pipe() which needed + to find the full path to a command could segfault if the 'long' + path name was much longer than the 'short' path name (which + Sys.which() returns), as the behaviour of the Windows API call + had changed. + + * R CMD build will fail with an error if one of the packages + specified in the VignetteBuilder field is not installed. + (Without loading those packages it cannot be ascertained which + files are intended to be vignettes. This means that the + VignetteBuilder packages have to be installed for package + checking too.) (Wish of PR#15775.) + + * Misguided attempts to use chull() with non-finite points now give + an error (related to PR#15777). + + * For a formula with exactly 32 variables the 32nd variable was + aliased to the intercept in some C-level computations of terms, + so that for example attempting to remove it would remove the + intercept instead (and leave a corrupt internal structure). + (PR#15735) + + * anyDuplicated() silently returned wrong values when the first + duplicate was at an index which was too large to be stored in an + integer vector (although a lot of RAM and patience would have + been needed to encounter this). + + * tools::Rd2ex(commentDontrun = FALSE) failed if the block had only + one line. + + * Hexadecimal constants such as 0x110p-5L which were incorrectly + qualified by L were parsed incorrectly since R 3.0.0, with a + slightly garbled warning. (PR#15753) + + * system() returned success on some platforms even if the system + was unable to launch a process. (PR#15796) + + * (Windows Rgui console.) Unbuffered output was sometimes not + output immediately if the prompt was not on the last line of the + console. + + * The built-in help server did not declare the encoding for the + DESCRIPTION or other text files to be the package encoding, so ++++ 49 more lines (skipped) ++++ between /work/SRC/openSUSE:Factory/R-base/R-base.changes ++++ and /work/SRC/openSUSE:Factory/.R-base.new/R-base.changes Old: ---- R-3.1.0.tar.bz2 New: ---- R-3.1.1.tar.bz2 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Other differences: ------------------ ++++++ R-base.spec ++++++ --- /var/tmp/diff_new_pack.Z26CMi/_old 2014-07-11 06:47:00.000000000 +0200 +++ /var/tmp/diff_new_pack.Z26CMi/_new 2014-07-11 06:47:00.000000000 +0200 @@ -18,7 +18,7 @@ Name: R-base %define release 1 -Version: 3.1.0 +Version: 3.1.1 Release: %release Source: R-%{version}.tar.bz2 #Source: http://cran.r-project.org/src/base/R-2/R-%%{version}.tar.gz @@ -85,10 +85,10 @@ Provides: R = %{version} Provides: R-KernSmooth = 2.23.12 -Provides: R-MASS = 7.3.31 -Provides: R-Matrix = 1.1.3 +Provides: R-MASS = 7.3.33 +Provides: R-Matrix = 1.1.4 #Provides: R-base = %%{version} # implicitly provided -Obsoletes: R-Matrix < 1.1.3 +Obsoletes: R-Matrix < 1.1.4 Provides: R-boot = 1.3.11 Provides: R-class = 7.3.10 Provides: R-cluster = 1.15.2 @@ -101,10 +101,10 @@ Provides: R-grid = %{version} Provides: R-lattice = 0.20.29 Provides: R-methods = %{version} -Provides: R-mgcv = 1.7.29 +Provides: R-mgcv = 1.8.0 Provides: R-nlme = 3.1.117 Provides: R-nnet = 7.3.8 -Provides: R-parallel = 3.0.2 +Provides: R-parallel = %{version} Provides: R-rpart = 4.1.8 Provides: R-spatial = 7.3.8 Provides: R-splines = %{version} @@ -122,10 +122,10 @@ %package -n R-base-devel Summary: Libraries and includefiles for developing with R-base Group: Development/Libraries/Other -Provides: R-Matrix-devel = 1.1.3 +Provides: R-Matrix-devel = 1.1.4 Provides: R-devel = %{version} Requires: R-base -Obsoletes: R-Matrix-devel < 1.1.3 +Obsoletes: R-Matrix-devel < 1.1.4 %description -n R-base-devel This package provides the necessary development headers and @@ -164,13 +164,6 @@ chmod -x %{buildroot}%{_libdir}/R/library/mgcv/CITATION -# littler should be used instead -# link R -> r -#%{__install} -m 755 -d %{buildroot}%{_bindir} -#pushd %{buildroot}%{_bindir} -# ln -s R r -#popd - %if %suse_version > 1020 %fdupes -s $RPM_BUILD_ROOT %endif ++++++ R-3.1.0.tar.bz2 -> R-3.1.1.tar.bz2 ++++++ /work/SRC/openSUSE:Factory/R-base/R-3.1.0.tar.bz2 /work/SRC/openSUSE:Factory/.R-base.new/R-3.1.1.tar.bz2 differ: char 11, line 1 -- To unsubscribe, e-mail: [email protected] For additional commands, e-mail: [email protected]
