Hello community, here is the log from the commit of package pymol for openSUSE:Factory checked in at 2015-07-22 09:20:00 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Comparing /work/SRC/openSUSE:Factory/pymol (Old) and /work/SRC/openSUSE:Factory/.pymol.new (New) ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "pymol" Changes: -------- --- /work/SRC/openSUSE:Factory/pymol/pymol.changes 2015-05-15 07:43:28.000000000 +0200 +++ /work/SRC/openSUSE:Factory/.pymol.new/pymol.changes 2015-07-22 09:20:04.000000000 +0200 @@ -1,0 +2,56 @@ +Tue Jul 14 15:06:53 UTC 2015 - [email protected] + +- update to svnrev 4131 + * fix handling of _pdbx_struct_assembly_gen with repeated asym_id + * create assembly for multi-state objects + * no pdb_insure_orthogonal for assemblies + * fix "File > Run" + * some "const correctness" refactoring + * experimental pymol.querying.get_object_ttt + * fix assemblies for cases like 4f3r which have multiple entries in the + _pdbx_struct_assembly_gen table + * fix ref counts in iterate/alter subscripts + * improve side_chain_helper and nucleic_adic_mode situation + * eliminate all "try/catch" blocks for std::map lookups + * clean up some MemoryDebug stuff and remove unused jenarix wrapper + * some mmCIF bonding fixes + * Experimental: cmd.get_assembly_ids + * mmCIF: support "_atom_site.pdbe_label_seq_id" + * mmCIF: set "ignore" flag for HETATMSs (no surface) + * improve memory usage and performance of components.cif parsing + * fix https://sf.net/p/pymol/bugs/169/ + * fetch 'cif' by default + * fix 5-letter cif-fetch + * fix mutagenesis wizard for ignore_case=0 + * add some documentation + * port selection macro parsing to C + * side-effects for settings min/max + * warn if selecting with lower-case arguments + * fix "File > Open" from drive root on Windows + * std::array replacement for pre-C++11 + * define NOMINMAX, fmax -> std::max + * correct setting-level handling in presets + * unset: restore default for string/float3/color, warn for int/bool/float + * fix "Display > Sequence" needs redisplay + * migrate seq_view_label_color=white from old PSE + * remove machine generated code from web/pymolhttpd.py + * fix segfault in read_pdbx_struct_assembly + * use snprintf instead of to_string (for c++0x) + * https://sourceforge.net/p/pymol/patches/10/ + * change default (!) of "ignore_case" setting to off. Case insensitve + identifier matching is not pctical anymore with large structures + which use upper and lower case chain identifiers. + * new setting "assembly" to load assemblies from mmCIF as multi-state + objects with all_states=1 + * new setting "cif_use_auth" controls whether mmCIF "auth" identifiers + are used or not (on by default) + * mmCIF "CA/P ATOMS ONLY" chains: set atom-level cartoon_trace_atoms + and ribbon_trace_atoms + * CIF discrete and irregular multi-model loading support + * support "pdb_honor_model_number" setting for CIF + * load multiple objects ("data_" blocks) from one CIF file (multiplex=-1) + * don't store AtmToIdx, DiscreteAtmToIdx or DiscreteCSet to PSE + (unless pse_export_version <= 1.76) + * make python2.6 compatible + +------------------------------------------------------------------- Old: ---- pymol-1.7.6.0.svn4121.tar.xz New: ---- pymol-1.7.7.1.svn4131.tar.xz ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Other differences: ------------------ ++++++ pymol.spec ++++++ --- /var/tmp/diff_new_pack.Oj8LY8/_old 2015-07-22 09:20:05.000000000 +0200 +++ /var/tmp/diff_new_pack.Oj8LY8/_new 2015-07-22 09:20:05.000000000 +0200 @@ -17,7 +17,7 @@ Name: pymol -Version: 1.7.6.0.svn4121 +Version: 1.7.7.1.svn4131 Release: 0 Url: http://pymol.org Summary: A Molecular Viewer @@ -36,7 +36,6 @@ BuildRequires: python-devel BuildRequires: python-numpy-devel Requires: glew -Requires: libxml2-2 Requires: python-numpy Requires: python-pmw %if 0%{?suse_version} ++++++ pymol-1.7.6.0.svn4121.tar.xz -> pymol-1.7.7.1.svn4131.tar.xz ++++++ /work/SRC/openSUSE:Factory/pymol/pymol-1.7.6.0.svn4121.tar.xz /work/SRC/openSUSE:Factory/.pymol.new/pymol-1.7.7.1.svn4131.tar.xz differ: char 26, line 1
