Dear List I am just a beginner of pymvpa and quite new in your group (though my collaborator Brian already participated in the debates of this ML). Now I am struggling to install upstream/0.6.0.dev from the source (http://git.debian.org/?p=pkg-exppsy/pymvpa.git;a=shortlog;h=refs/tags/upstream/0.6.0.dev) in NeuroDebian on Windows 7 amd-64. The result is as follows. >>> import mvpa (success. No warning) >>> from mvpa.misc.io.base import SampleAttributes (success. No warning) >>> from mvpa.datasets.nifti import NiftiDataset Traceback (most recent call last): File "<stdin>", line 1, in <module> ImportError: No module named nifti
I guess even though nifti is present (because 'import nifti' passes with no problem), python couldn't find it. I'll cite the result of mvpa.wtf() at the end of this mail. It would be much appreciated giving me advices. I am wondering whether it is due to the virtual environment, (#As upstream/0.5.0.dev in https://github.com/PyMVPA/PyMVPA/downloads didn't work well (for example, mvpa/tests/badexternals/__init__.py was lost a warning message about the depreciation of verbosity.py appeared, etc.), so I gave it up to challenge 0.6.0dev.) Hiroyuki AKAMA Associate Professor, Graduate School of Decision Science and Technology Tokyo Institute of Technology, W9-10, O-okayama, Meguro-ku, Tokyo-152-8552 Japan ak...@dp.hum.titech.ac.jp http://www.dp.hum.titech.ac.jp >>> mvpa.__version__ '0.6.0.dev' >>> mvpa.wtf() Current date: 2010-12-14 01:36 PyMVPA: Version: 0.6.0.dev Path: mvpa/__init__.pyc Version control (GIT): GIT information could not be obtained due "mvpa/.. is not under GIT" SYSTEM: OS: posix Linux 2.6.32-5-amd64 #1 SMP Fri Dec 10 15:35:08 UTC 2010 Distribution: debian/squeeze/sid EXTERNALS: Present: cPickle, ctypes, good scipy.stats.rdist, good scipy.stats.rv_discrete.ppf, griddata, gzip, matplotlib, mdp, mdp ge 2.4, nifti, nifti ge 0.20090205.1, numpy, pylab, pylab plottable, pywt, pywt wp reconstruct, reportlab, scipy, sg ge 0.6.4, sg ge 0.6.5, sg_fixedcachesize, shogun, shogun.krr, shogun.mpd, shogun.svmocas Absent: atlas_fsl, atlas_pymvpa, elasticnet, glmnet, h5py, hcluster, lars, libsvm, libsvm verbosity control, lxml, mass, nibabel, nipy, nose, openopt, pprocess, pywt wp reconstruct fixed, rpy2, running ipython env, shogun.lightsvm, shogun.svrlight, skl, weave Versions of critical externals: shogun:full : 0.9.3_r4889_2010-05-27_20:52_ shogun:rev : 4889 reportlab : 2.4 shogun : 0.9.3 matplotlib : 0.99.3 scipy : 0.7.2 mdp : 2.6 numpy : 1.4.1 ctypes : 1.1.0 matplotlib : 0.99.3 nifti : 0.20100607.1 numpy : 1.4.1 pywt : 0.2.0 shogun : v0.9.3_r4889_2010-05-27_20:52_ Matplotlib backend: TkAgg RUNTIME: PyMVPA Environment Variables: PyMVPA Runtime Configuration: [externals] have griddata = yes have pprocess = no have good scipy.stats.rdist = yes have pylab plottable = yes have pywt wp reconstruct = yes have h5py = no have lxml = no have running ipython env = no have nibabel = no have sg_fixedcachesize = yes have elasticnet = no have shogun.mpd = yes have matplotlib = yes have pywt wp reconstruct fixed = no have scipy = yes have reportlab = yes have openopt = no have libsvm = no have shogun.krr = yes have nifti ge 0.20090205.1 = yes have nose = no have weave = no have atlas_fsl = no have ctypes = yes have hcluster = no have sg ge 0.6.4 = yes have sg ge 0.6.5 = yes have good scipy.stats.rv_discrete.ppf = yes have libsvm verbosity control = no have mdp ge 2.4 = yes have shogun.svrlight = no have shogun = yes have shogun.svmocas = yes have nipy = no have glmnet = no have mass = no have lars = no have nifti = yes have atlas_pymvpa = no have cpickle = yes have mdp = yes have numpy = yes have pylab = yes have rpy2 = no have shogun.lightsvm = no have pywt = yes have skl = no have gzip = yes [general] verbose = 1 Process Information: Name: python State: R (running) Tgid: 4864 Pid: 4864 PPid: 2503 TracerPid: 0 Uid: 1000 1000 1000 1000 Gid: 1000 1000 1000 1000 FDSize: 256 Groups: 24 25 27 29 30 44 46 1000 VmPeak: 373920 kB VmSize: 373920 kB VmLck: 0 kB VmHWM: 63076 kB VmRSS: 63076 kB VmData: 55220 kB VmStk: 252 kB VmExe: 2164 kB VmLib: 59288 kB VmPTE: 708 kB Threads: 2 SigQ: 0/16382 SigPnd: 0000000000000000 ShdPnd: 0000000000000000 SigBlk: 0000000000000000 SigIgn: 0000000001001000 SigCgt: 0000000180000002 CapInh: 0000000000000000 CapPrm: 0000000000000000 CapEff: 0000000000000000 CapBnd: ffffffffffffffff Cpus_allowed: 1 Cpus_allowed_list: 0 Mems_allowed: 00000000,00000001 Mems_allowed_list: 0 voluntary_ctxt_switches: 4116 nonvoluntary_ctxt_switches: 257 >>> can't invoke "event" command: application has been destroyed while executing "event generate $w <<ThemeChanged>>" (procedure "ttk::ThemeChanged" line 6) invoked from within "ttk::ThemeChanged" _______________________________________________ Pkg-ExpPsy-PyMVPA mailing list Pkg-ExpPsy-PyMVPA@lists.alioth.debian.org http://lists.alioth.debian.org/mailman/listinfo/pkg-exppsy-pymvpa