Hej Jose,
This script may do what you need. The core is to use iterate over the
different identifiers. I'm not sure if there's a more convenient way,
though.
################################################################################
python
def get_macro_name(sele):
'''
will return the atom macro name of the first atom in selection
accepts non-macro selection style only
'''
from pymol import stored
# name macro
try:
sele='first (%s)'%sele # reduce sele to one atom
stored.macroname=''
cmd.iterate(sele, 'stored.macroname="/%s/%s/%s/%s`%s/" %(model,
segi, chain, resn, resi)')
return stored.macroname
except:
raise Exception(("Invalid selection:\n#####\n"
"Error in get_resi_macro_name\n#####"))
python end
print get_macro_name('resi 1 and name CA') # example
################################################################################
Hope this helps,
Andreas
On Mon, Jul 14, 2014 at 12:28 AM, Jose Borreguero <[email protected]>
wrote:
> Dear pymol users,
>
> When I click in an atom (mouse->selection mode->atoms) I get the
> /chain_name/residue_name/atom_name info string. Is there a way to output
> the atom serial or atom index?
> My molecule has atoms with duplicate names within the same residue, so the
> info string chain_name/residue_name/atom_name does not uniquely identify an
> atom. I need to see the atom index or atom serial.
>
> Thanks in advance for your help!
> -Jose
>
>
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