Michael d/l a recent build http://delsci.com/beta
and use the "find"->"polar contacts" option under the objects Action "A" menu in the viewer window. Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:war...@delsci.com > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Michael Weber > Sent: Monday, October 17, 2005 5:03 AM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] automated H-bond computation & visualization > in pyMOL? > > Hello everybody, > I am new to PyMOL and I have a short question: In pyMOL - is > it possible to automatically compute and visualize H-bonds in > .PDB files as it is e.g. possible in SWISS-PDB-VIEWER? Maybe > there is a pyMOL script for this purpose? I need such a > function for my work with catalytically active RNA molecules > (e.g. PDB # 2A2E, 2A64, 1NBS, 1U9S). Would be nice if someone > could help me with this problem... > > All the best & thanks in advance, > Michael. >
