Hi Adiphol * adi di <adipho...@yahoo.com> [2007-05-11 10:26] wrote: > Dear all, > > I am trying to put on the electron density. I only > have .mtz file but I have a look at the manual and the > program need XPLOR file. How can I get the XPLOR file > or do I need to convert the mtz file to this - if so > how can I do that? Thank you very much
Actually PyMOL can read ccp4 format maps, but they have to be maps, not the mtz reflection file with the columns h, k, l, FWT, PHWT etc. as output by refmac and other programs. If you ask refmac to output a CCP4 format map, then PyMOL can read it: load filename.map, map_obj, format=ccp4 will load the map and create an object called map_obj. The latter then needs to be contoured by PyMOL. For example: isomesh lev1, map_obj, selection=molecule & c. a & resi 100, level=1, buffer=8. would create an object called lev1 with a contour level of 1 in a box of 8Angstroms around residue 100 of chain a of "molecule". Hope that helps, Rob -- Robert L. Campbell, Ph.D. Senior Research Associate/Adjunct Assistant Professor Botterell Hall Rm 644 Department of Biochemistry, Queen's University, Kingston, ON K7L 3N6 Canada Tel: 613-533-6821 Fax: 613-533-2497 <robert.campb...@queensu.ca> http://pldserver1.biochem.queensu.ca/~rlc
