On Fri, 03 Jul 2009 16:18:10 +0200, Raluca Mihaela ANDREI <r.and...@sns.it> wrote:
> Hi! > Can somebody tell me why I can't create surfaces for the > oligosaccharide chains? By default, the surface and mesh commands ignore all atoms in HETATM records in a PDB file. You can change that with: set surface_mode, 1 set mesh_mode, 1 That means, though, that *all* hetatm atoms will have a surface drawn. If you want to draw a surface for your oligosaccharide chains alone, then you can copy them to a separate object and set the surface_mode flag just for that object: set surface_mode, 0 create saccharide, object & <selection> (fill in your residue selection for <selection>) set surface_mode, 1, saccharide Hope that helps, Rob -- Robert L. Campbell, Ph.D. Senior Research Associate/Adjunct Assistant Professor Botterell Hall Rm 644 Department of Biochemistry, Queen's University, Kingston, ON K7L 3N6 Canada Tel: 613-533-6821 Fax: 613-533-2497 <robert.campb...@queensu.ca> http://pldserver1.biochem.queensu.ca/~rlc ------------------------------------------------------------------------------ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
