Hi David On Thu, 10 Sep 2009 14:47:43 -0700 (PDT) David Hall <dwash59_2...@yahoo.com> wrote:
> Is there any documentation on getting information out of alignment objects > into scripts? I tried looking around the wiki, but I didn't see anything. > > I'm just wondering things like if I have a residue in one object, finding > the residue in another object that has been aligned. If you create an alignment object when you do the alignment: align proteinA, proteinB, object=A_on_B then you can save a clustal formatted alignment file by typing: save A_aligned_with_B.aln, A_on_B (same applies if you use the "super" command instead of "align"). Cheers, Rob -- Robert L. Campbell, Ph.D. Senior Research Associate/Adjunct Assistant Professor Botterell Hall Rm 644 Department of Biochemistry, Queen's University, Kingston, ON K7L 3N6 Canada Tel: 613-533-6821 Fax: 613-533-2497 <robert.campb...@queensu.ca> http://pldserver1.biochem.queensu.ca/~rlc ------------------------------------------------------------------------------ Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day trial. Simplify your report design, integration and deployment - and focus on what you do best, core application coding. Discover what's new with Crystal Reports now. http://p.sf.net/sfu/bobj-july _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
