Hi ,
I generally track trunk on pymol , i.e I keep my Ubuntu 64 bit linux box
updated with the latest subversion build.
While compiling revision 3897.
I had an error during the build while compiling Cmd.h saying it could not
find "ce_types.h"
That file does exist in
trunk/pymol/modules/cealign/src/ce_types.h
And copying it to trunk/pymol/layer4/ does make it compile fully , but then
the built executable fails to launch with another error ( see below)
So I am just wondering if anyone else is seeing this . Thanks for your help.
Hari
# Initial error without include of ce_types.h
Cmd.c:87:21: error: ce_types.h: No such file or directory
Cmd.c: In function ‘CmdCEAlign’:
Cmd.c:8506: error: ‘pcePoint’ undeclared (first use in this function)
Cmd.c:8506: error: (Each undeclared identifier is reported only once
Cmd.c:8506: error: for each function it appears in.)
Cmd.c:8506: error: expected ‘;’ before ‘coordsA’
Cmd.c:8507: error: ‘pathCache’ undeclared (first use in this function)
Cmd.c:8507: error: expected ‘;’ before ‘paths’
Cmd.c:8540: error: ‘coordsA’ undeclared (first use in this function)
Cmd.c:8540: error: expected ‘;’ before ‘getCoords’
Cmd.c:8541: error: ‘coordsB’ undeclared (first use in this function)
Cmd.c:8541: error: expected ‘;’ before ‘getCoords’
Cmd.c:8544: warning: cast to pointer from integer of different size
Cmd.c:8545: warning: cast to pointer from integer of different size
Cmd.c:8548: warning: cast to pointer from integer of different size
Cmd.c:8554: error: ‘paths’ undeclared (first use in this function)
Cmd.c:8554: error: expected ‘;’ before ‘findPath’
Cmd.c:8557: warning: cast to pointer from integer of different size
make[2]: *** [Cmd.lo] Error 1
make[2]: Leaving directory `/home/hari/pymol/trunk/pymol/layer4'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/hari/pymol/trunk/pymol'
make: *** [all] Error 2
# Error on forced compiling after copying ce_types.h into include path
Traceback (most recent call last):
File "/home/hari/pymol/trunk/pymol/modules/launch_pymol.py", line 32, in
<module>
import pymol
File "/home/hari/pymol/trunk/pymol/modules/pymol/__init__.py", line 472,
in <module>
import _cmd
ImportError: /home/hari/pymol/trunk/pymol/modules/pymol/_cmd.so: undefined
symbol: findBest
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