I found the ce_types.h problem happens with autotools, but not with setup.py
method.
-David
On Apr 6, 2011, at 5:59 PM, Paul Rigor <paul.ri...@uci.edu> wrote:
> Hi all,
>
> So I tried compiling the 1.4b today and came across a couple of issues.
> 1) The layer3/Executive.c is attempting to include "ce_types.h" locally but
> the header file is actually under 'modules/cealign/src'
>
> 2) With a quick hack, I was able to compile. However, when attempting to run
> the binary, I get the following error:
> ImportError: /lv_disk00/preserve/tmp/pymol/modules/pymol/_cmd.so:
> undefined symbol: _ZNSs4_Rep20_S_empty_rep_storageE
>
> However, it seems that there is no missing library dependency (quick check
> with ldd).
>
> Has anyone run into any of these issues. I'm running python 2.6 on a CentOS
> 5.5 distro on a 64-bit machine.
>
> Thanks,
> paul
>
> --
> Paul Rigor
> http://www.ics.uci.edu/~prigor
>
>
>
> On Mon, Apr 4, 2011 at 6:07 AM, Tru Huynh <t...@pasteur.fr> wrote:
> Hi Jason,
>
> On Mon, Apr 04, 2011 at 08:19:17AM -0400, Jason Vertrees wrote:
> >
> > As you have discovered, and I forgot to mention, Python 2.5 or later
> > is now required. This is due to 64-bit types using Py_ssize_t.
>
> If the patch is the only thing needed to support "Py_ssize_t" for python 2.4
> please consider adding it for "backport".
>
> Cheers,
>
> Tru
>
> --
> Dr Tru Huynh | http://www.pasteur.fr/recherche/unites/Binfs/
> mailto:t...@pasteur.fr | tel/fax +33 1 45 68 87 37/19
> Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15 France
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