Hello all,
I finally solved the problem by updating my video drivers to the most up
to date drivers from the xorg edgers project. I think they're rather
experimental but seem to work nicely for me so far.
Thanks for all the helpful suggestions.
Bernhard
-----Original Message-----
From: Bernhard Lechtenberg <bc...@cam.ac.uk>
To: Jason Vertrees <jason.vertr...@schrodinger.com>
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] Problems with Pymol 1.4.1 under Ubuntu 11.04
Date: Thu, 09 Jun 2011 21:31:58 +0100
Jason,
clicking inside the window does not have any effect. I can't even close
the window, other than terminating the terminal I started it from. The
only thing that works is minimizing and moving the window around on the
desktop.
I just compiled pymol 1.4.1 on my home computer which also runs Ubuntu
11.04 and also has an Intel Graphics card and everything seems to be
alright here. Only difference I can think of is that the home computer
has an older Intel graphics board, which only supports an OpenGL version
prior to 2.0, hence the shaders and volumes in pymol are unavailable.
Not sure if that could be the difference.
Thanks,
Bernhard
Am Donnerstag, den 09.06.2011, 16:00 -0400 schrieb Jason Vertrees:
> Hi Bernhard,
>
> I just compiled and installed PyMOL v1.4.1 on Ubuntu 11.04 on using a
> virtual machine (Parallels). PyMOL worked fine except for some some
> goofy rendering artifacts when you move the PyMOL window around.
> Those artifacts go away when you click inside the window to resume
> PyMOL. I believe these artifacts are due to the unity system or the
> Parallels OpenGL drivers.
>
> Does clicking inside the openGL window resume PyMOL or is PyMOL just frozen?
>
> Also, I just pushed a change that includes better rendering for
> volumes. This helped quite a bit on my VM.
>
> Cheers,
>
> -- Jason
>
> On Thu, Jun 9, 2011 at 12:04 PM, Bernhard Lechtenberg <bc...@cam.ac.uk> wrote:
> > Hello Jason
> >
> > all desktop effects should have been turned off, but just too make sure
> > I started Ubuntu with the option 'Ubuntu Classic - no effects' but the
> > problem with pymol still persists.
> >
> > Do you have any other ideas?
> >
> > Thanks,
> > Bernhard
> >
> > -----Original Message-----
> > From: Jason Vertrees <jason.vertr...@schrodinger.com>
> > To: Bernhard Lechtenberg <bc...@cam.ac.uk>
> > Cc: pymol-users@lists.sourceforge.net
> > Subject: Re: [PyMOL] Problems with Pymol 1.4.1 under Ubuntu 11.04
> > Date: Thu, 9 Jun 2011 11:24:27 -0400
> >
> > Bernhard,
> >
> > Do you have desktop effects (aka compositing) turned on? If so,
> > please turn it off and try PyMOL again.
> >
> > Cheers,
> >
> > -- Jason
> >
> > On Thu, Jun 9, 2011 at 9:53 AM, Bernhard Lechtenberg <bc...@cam.ac.uk>
> > wrote:
> >> Dear Pymol users
> >>
> >> because I had the stick coloring problem with my Intel graphics board, I
> >> just compiled Pymol 1.4.1 under Ubuntu 11.04 (had some problems there
> >> and had to change from gcc4.5 to gcc4.4, but it then worked). However,
> >> now I have another problem after starting pymol. The main Pymol Viewer
> >> window pops up after starting pymol, but I don't see anything other than
> >> the outer frame of the window with just a snapshot of the Desktop
> >> background in the center. The other pymol window does not appear at all
> >> and there are no error messages in the terminal, it only shows:
> >>
> >> PyMOL(TM) Molecular Graphics System, Version 1.4.1.
> >> Copyright (c) Schrodinger, LLC.
> >> All Rights Reserved.
> >> {...cut out ...}
> >> Detected OpenGL version 2.0 or greater. Shaders available.
> >>
> >> I did not have those problems with pymol 1.3.
> >>
> >> Any suggestions how to solve this problem would be highly appreciated.
> >>
> >> Thanks,
> >> Bernhard
> >>
> >>
> >> ------------------------------------------------------------------------------
> >> EditLive Enterprise is the world's most technically advanced content
> >> authoring tool. Experience the power of Track Changes, Inline Image
> >> Editing and ensure content is compliant with Accessibility Checking.
> >> http://p.sf.net/sfu/ephox-dev2dev
> >> _______________________________________________
> >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
> >>
> >
> >
> >
> >
> >
>
>
>
------------------------------------------------------------------------------
EditLive Enterprise is the world's most technically advanced content
authoring tool. Experience the power of Track Changes, Inline Image
Editing and ensure content is compliant with Accessibility Checking.
http://p.sf.net/sfu/ephox-dev2dev
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EditLive Enterprise is the world's most technically advanced content
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Editing and ensure content is compliant with Accessibility Checking.
http://p.sf.net/sfu/ephox-dev2dev
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