Holfelder!
I don't see your doubts. Your first point's a guess - and you're right
- and the second one a questions.
Before I answer, one warning: If you have 10000 pdb files and numbering
starts at 1, the last one will be 10000, not 9999 like you say. Be
aware of what you have.
for i in range (1,10001): \
cmd.load("x_%d.pdb" %i) \
cmd.super("x_%d" %i, "x_1")
Will load 10000 files and superpose every structure onto the first. The
curious % notation substitutes a variable into a string. The load loads
files and super superposes one structure onto another.
Hope that helps.
Andreas
On 10/07/2011 12:05, Babban Mia wrote:
> Hello Everyone
>
> I have got a doubt relating to making PYMOL MOVIE.
> I have like 10,000 PDBs named x_1.pdb .....x_23.pdb and so on
>
> I want to make a movie which essentially should act as the slideshow
> from x_1.pdb to ..... x_9999.pdb
>
> This would show,kind of show the MD simulations for the protein.
>
> DOUBTS :
>
> 1 . I guess I would have to align the pdbs wrt some source to actually
> be able to see the real MD changes in the succeeding pdb structures.
> 2. Please show me some commands on how I can achieve all of above.
>
> Thanks again
>
> Best
>
> Holfelder
>
>
>
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--
Andreas Förster, Research Associate
Paul Freemont & Xiaodong Zhang Labs
Department of Biochemistry, Imperial College London
http://www.msf.bio.ic.ac.uk
------------------------------------------------------------------------------
All of the data generated in your IT infrastructure is seriously valuable.
Why? It contains a definitive record of application performance, security
threats, fraudulent activity, and more. Splunk takes this data and makes
sense of it. IT sense. And common sense.
http://p.sf.net/sfu/splunk-d2d-c2
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