Hi Kristoffer, Cartoon transparency is an object-level property. You can use this trick though: http://pymolwiki.org/index.php/Cartoon#Various_Transparency_Levels.
Cheers, -- Jason On Thu, Dec 1, 2011 at 10:34 AM, essolini <[email protected]> wrote: > Greetings! > > I have a problem with Pymol driving me crazy, and I hope someone is able to > help me. > > Is there a way of displaying selected residues in a cartoon structure with > another transparency than the rest? I have tried to make a selection of > residues from an object (let's call it sel), and then type: > > set cartoon_transparency = 0.8, sel > > After doing that, the following message comes up in the command window: > > Setting: cartoon_transparency set for 36 atoms in object "3FJQ". > > But nothing happens! > > I found this in the archives, describing a similar problem but regarding > sticks: > > https://sourceforge.net/mailarchive/message.php?msg_id=27522311 > > Is there a similar solution to the problem only regarding cartoon? > > > > Can someone tell me what I am doing wrong? Your help is very much > appreciated! > > Kristoffer > ------------------------------------------------------------------------------ > All the data continuously generated in your IT infrastructure > contains a definitive record of customers, application performance, > security threats, fraudulent activity, and more. Splunk takes this > data and makes sense of it. IT sense. And common sense. > http://p.sf.net/sfu/splunk-novd2d > _______________________________________________ > PyMOL-users mailing list ([email protected]) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/[email protected] -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) [email protected] (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-novd2d _______________________________________________ PyMOL-users mailing list ([email protected]) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/[email protected]
