Dear Thomas, Thanks for good pointing for the weird problem, which I couldn't notice at all.
> You do compile with -D_FORTIFY_SOURCE=2, could you remove that? I'm afraid, I know not related PyMOL itself, but I wish to know how to do that. Searching 'setup.py', 'setup2.py' or some 'Makefile*' with the string 'D_FORTIFY_SOURCE' or 'gcc' returned no matches. And Zhijian and Andreas, Thank you for advices through your experiences, I will pursue at first as Thomas advised. Regards, Masataka 2011/12/5 Andreas Förster <docandr...@gmail.com>: > Dear Masataka, > > a few months ago, I upgraded most of our computers from RHEL 5.x to 6.1. If > version 6 of CentOS (free RHEL clone) is out, I would highly recommend, no I > would urge you, to upgrade as well. RHEL and CentOS are rock-solid > operating systems, but their libraries and dependencies show their age. > > > Andreas > > > > On 05/12/2011 1:50, grantaka36 wrote: >> >> Hi, Marius, Troels and David, >> >> I appreciate very much for guiding, tried in three ways but no success >> currently. >> >> - I also think some difference on distributions (CentOS 5 here,) trapped >> at >>> >>> function 'IsosurfGetRange' >> >> Does anyone have information to workaround? >> - Do you think if any dependency on Python version (2.4.3 here)? >> >> Attached '20111205_script_and_error.zip' is for information sharing: >> - 'install_pymol.sh' : followed by below, some package name modified for >> CentOS >> >> http://www.pymolwiki.org/index.php/Linux_Install#Ubuntu.2FMint_Compile_and_install_with_MPEG_support >> - 'install_pymol_sh_error.txt' >>> >>> layer0/Isosurf.c:2197:1: error: unterminated argument list invoking macro >>> "fprintf" >>> layer0/Isosurf.c: In function 'IsosurfGetRange': >> >> >> - 'install_pymol_gcc45.sh' - aiming to use default installed gcc4.5 >> instead of 4.4 >> - 'install_pymol_gcc45_sh_error.txt' >>> >>> layer0/Isosurf.c: In function 'IsosurfGetRange': >>> layer0/Isosurf.c:2197:0: error: unterminated argument list invoking macro >>> "fprintf" >> >> >> - 'compile_pymol.sh' : again by initial trying >> http://www.pymolwiki.org/index.php/Linux_Install#Install_from_source >> - 'compile_pymol_sh_error.txt' >>> >>> layer0/Isosurf.c: In function 'IsosurfGetRange': >>> layer0/Isosurf.c:2197:0: error: unterminated argument list invoking macro >>> "fprintf" >> >> >> >> Regards, >> Masataka >> >> > -- > Andreas Förster, Research Associate > Paul Freemont & Xiaodong Zhang Labs > Department of Biochemistry, Imperial College London > http://www.msf.bio.ic.ac.uk ------------------------------------------------------------------------------ Cloud Services Checklist: Pricing and Packaging Optimization This white paper is intended to serve as a reference, checklist and point of discussion for anyone considering optimizing the pricing and packaging model of a cloud services business. Read Now! http://www.accelacomm.com/jaw/sfnl/114/51491232/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
