Hi Manas,

have you tried turning the normalize_* setting off?

set normalize_ccp4_maps, off
set normalize_o_maps, off
set normalize_grd_maps, off

http://pymolwiki.org/index.php/Normalize_ccp4_maps
http://pymolwiki.org/index.php/Display_CCP4_Maps#User_Notes

Cheers,
   Thomas

On 12/06/2011 03:12 PM, Manas Sule wrote:
> Is there a difference in the sigma values assigned by pymol and coot????
> I am able to see the density at 8 sigma in coot for the Fo-Fc map but
> can go to maximum at 4.5 sigma in pymol after which it disappears....

-- 
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen

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