Dear all, on our RHEL computers (6.2, 64-bit) with PyMOL compiled from CVS, the APBS2 plugin isn't functioning anymore. The plugin window opens just fine and the executables are found.
When I select "Use PDB2PQR" in the Main tab, clicking on Set grid produces the following error: Error: 1 <type 'exceptions.UnboundLocalError'> Exception in Tk callback Function: <function <lambda> at 0x7fc2b0705410> (type: <type 'function'>) Args: () Traceback (innermost last): File "/usr/lib/python2.6/site-packages/Pmw/Pmw_1_3_3/lib/PmwBase.py", line 1747, in __call__ return apply(self.func, args) File "/usr/lib/python2.6/site-packages/Pmw/Pmw_1_3_3/lib/PmwDialog.py", line 153, in <lambda> command=lambda self=self, name=name: self._doCommand(name)) File "/usr/lib/python2.6/site-packages/Pmw/Pmw_1_3_3/lib/PmwDialog.py", line 132, in _doCommand return command(name) File "/usr/lib64/python2.6/site-packages/pmg_tk/startup/apbs_tools.py", line 1075, in execute self.runPsize() File "/usr/lib64/python2.6/site-packages/pmg_tk/startup/apbs_tools.py", line 1096, in runPsize good = self.generatePqrFile() File "/usr/lib64/python2.6/site-packages/pmg_tk/startup/apbs_tools.py", line 1007, in generatePqrFile good = self._generatePdb2pqrPqrFile() File "/usr/lib64/python2.6/site-packages/pmg_tk/startup/apbs_tools.py", line 1615, in _generatePdb2pqrPqrFile if retval != 0: <type 'exceptions.UnboundLocalError'>: local variable 'retval' referenced before assignment When I chose "User PyMOL generated PQR and PyMOL generated Hydrogens and termini" or "User PyMOL generated PQR and existing hydrogens and termini", I can set the grid, run APBS and visualize the result just fine. I'm happy with that, but maybe someone has an idea of why the first approach fails. Thanks. Andreas -- Andreas Förster, Research Associate Paul Freemont & Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk ------------------------------------------------------------------------------ Master Visual Studio, SharePoint, SQL, ASP.NET, C# 2012, HTML5, CSS, MVC, Windows 8 Apps, JavaScript and much more. Keep your skills current with LearnDevNow - 3,200 step-by-step video tutorials by Microsoft MVPs and experts. ON SALE this month only -- learn more at: http://p.sf.net/sfu/learnmore_122712 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net